The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama06112 | |
| Ama06113 | |
| Ama06116 | |
| Ama06117 | |
| Ama06118 | INHIBITOR OF APOPTOSIS |
| Ama06119 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
| Ama06120 | S-ADENOSYLMETHIONINE DECARBOXYLASE |
| Ama06121 | |
| Ama06123 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| Ama06124 | FRIZZLED |
| Ama06125 | MUCIN-17 |
| Ama06127 | |
| Ama06128 | REGULATOR OF CHROMOSOME CONDENSATION |
| Ama06129 | |
| Ama06130 | TRANSMEMBRANE PROTEIN 242 |
| Ama06131 | |
| Ama06132 | |
| Ama06133 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
| Ama06135 | PROTEIN CMSS1 |
| Ama06136 | UNCHARACTERIZED |
| Ama06137 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 |
| Ama06138 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Ama06140 | EXPRESSED PROTEIN |
| Ama06141 | - |
| Ama06142 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama06148 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| Ama06149 | RING BOX |
| Ama06152 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Ama06154 | |
| Ama06155 | TRANSPOSABLE ELEMENT-RELATED |
| Ama06156 | |
| Ama06157 | D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH |
| Ama06158 | |
| Ama06159 | PENICILLIN-BINDING PROTEIN |
| Ama06161 | DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED |
| Ama06162 | REVERSE TRANSCRIPTASES |
| Ama06163 | POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4 |
| Ama06166 | |
| Ama06167 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama06168 | |
| Ama06169 | GDP-L-FUCOSE SYNTHASE |
| Ama06170 | |
| Ama06171 | MALE FERTILITY FACTOR KL5 |
| Ama06173 | |
| Ama06174 | MIDASIN-RELATED |
| Ama06175 | |
| Ama06176 | |
| Ama06177 | |
| Ama06178 | MIDASIN-RELATED |
| Ama06179 | MIDASIN-RELATED |
