About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama00001
Ama00002
Ama00003-
Ama00005FMRFAMIDE RECEPTOR-RELATED
Ama00007
Ama00008FMRFAMIDE RECEPTOR-RELATED
Ama00009CENTROCORTIN FAMILY MEMBER
Ama00010
Ama00011
Ama00012
Ama00013
Ama00014
Ama00015
Ama00016
Ama00017
Ama00018
Ama00019
Ama00020
Ama00021
Ama00022
Ama00023
Ama00024
Ama00025
Ama00026NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN
Ama00027GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)
Ama00028ALANINE RACEMASE
Ama00030ALANINE RACEMASE
Ama00034
Ama00042LEUKOCYTE RECEPTOR CLUSTER MEMBER 9
Ama00044POLYCYSTIN FAMILY MEMBER
Ama00045
Ama00046POLYCYSTIN FAMILY MEMBER
Ama00048PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama00049REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama00050SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Ama00051
Ama00052
Ama00053
Ama00054C10ORF188 FAMILY MEMBER
Ama00056RHOMBOID-RELATED PROTEIN
Ama00057COLLAGEN ALPHA
Ama00058COLLAGEN ALPHA
Ama00059REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama00060SERINE PROTEASE-RELATED
Ama00062F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Ama00064THAP DOMAIN PROTEIN
Ama00065TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
Ama00066TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
Ama00071RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama00074CYTOCHROME P450 FAMILY 3
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