Transcriptomic samples

A brief summary of 950 transcriptomic samples are provided, including different adult tissues and developmental stages. Select the corresponding column headings to see the detailed information.

Phylum
Species


Sample IDSpeciesBioProjectSRALayouttissueGroupHabitatDepthSubmitterPubmed IDYear
 DRX071275Gigantidas platifronsPRJDB5345DRP003676PAIREDgill-Off Hatsushima seep sites in Sagami Bay (35°00.97′N, 139°13.32′E）857 JAMSTEC284536542017
 DRX207000Gigantidas platifronsPRJDB9496DRP007184SINGLE--Japan:Sagami bay (35.01541 N 139.22383 E)-JAMSTEC-2021
 DRX207001Gigantidas platifronsPRJDB9496DRP007184SINGLE--Japan:Sagami bay (35.01541 N 139.22383 E)-JAMSTEC-2021
 SRX436365Gigantidas platifronsPRJNA235357SRP035485PAIREDfoot-cold seep on the continental slope of the South China Sea (22° 06.921′ N, 119° 17.131′ E)1,122 Hong Kong Baptist University265934392015
 SRX610901Gigantidas platifronsPRJNA235357SRP035485PAIREDgill-cold seep on the continental slope of the South China Sea (22° 06.921′ N, 119° 17.131′ E)1,122 Hong Kong Baptist University265934392015
 SRX610902Gigantidas platifronsPRJNA235357SRP035485PAIREDmantle-cold seep on the continental slope of the South China Sea (22° 06.921′ N, 119° 17.131′ E)1,122 Hong Kong Baptist University265934392015
 SRX1933418Gigantidas platifronsPRJNA328542SRP078287PAIREDAdductor muscle, Ovary, Visceral massadult stage, female, 7-8 yearsmethane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea1,122 Hong Kong Baptist University288127092017
 SRX1933483Gigantidas platifronsPRJNA328542SRP078287PAIREDAdductor muscle, Ovary, Visceral massadult stage, female, 7-8 yearsmethane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea1,122 Hong Kong Baptist University288127092017
 SRX1933530Gigantidas platifronsPRJNA328542SRP078287PAIREDAdductor muscle, Ovary, Visceral massadult stage, female, 7-8 yearsmethane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea1,122 Hong Kong Baptist University288127092017
 SRX2781375Gigantidas platifronsPRJNA353979SRP093517PAIREDgills, mantles and adductorLinkcold seep (27°47.44′N, 126°53.802 9′E)997 Insitute of Oceanology, CASLink2018
 SRX2468547Gigantidas platifronsPRJNA360359SRP096170PAIREDgill-cold seep at in the South China Sea1,100 Insitute of Oceanology, CAS284375682017
 SRX2481528Gigantidas platifronsPRJNA360359SRP096170PAIREDgill-cold seep at in the South China Sea1,100 Insitute of Oceanology, CAS284375682017
 SRX2481529Gigantidas platifronsPRJNA360359SRP096170PAIREDgill-cold seep at in the South China Sea1,100 Insitute of Oceanology, CAS284375682017
 SRX4901552Gigantidas platifronsPRJNA493715SRP166032PAIREDgillAfter 7 days of “de-symbiont” treatment, cultured in FISSWmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901553Gigantidas platifronsPRJNA493715SRP166032PAIREDgillAfter 7 days of “de-symbiont” treatment, treated with symbiontsmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901554Gigantidas platifronsPRJNA493715SRP166032PAIREDgill7 days of “de-symbiont” treatmentmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901555Gigantidas platifronsPRJNA493715SRP166032PAIREDgill7 days of “de-symbiont” treatmentmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901556Gigantidas platifronsPRJNA493715SRP166032PAIREDgillAfter 7 days of “de-symbiont” treatment, cultured in FISSWmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901557Gigantidas platifronsPRJNA493715SRP166032PAIREDgillAfter 7 days of “de-symbiont” treatment, cultured in FISSWmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901558Gigantidas platifronsPRJNA493715SRP166032PAIREDgillhealthy mussels were conditioned for 48hrsmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901559Gigantidas platifronsPRJNA493715SRP166032PAIREDgillhealthy mussels were conditioned for 48hrsmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901560Gigantidas platifronsPRJNA493715SRP166032PAIREDgillhealthy mussels were conditioned for 48hrsmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901561Gigantidas platifronsPRJNA493715SRP166032PAIREDgill7 days of “de-symbiont” treatmentmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901562Gigantidas platifronsPRJNA493715SRP166032PAIREDgillAfter 7 days of “de-symbiont” treatment, treated with an environmental bacterialmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901563Gigantidas platifronsPRJNA493715SRP166032PAIREDgillAfter 7 days of “de-symbiont” treatment, treated with an environmental bacterialmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901564Gigantidas platifronsPRJNA493715SRP166032PAIREDgillAfter 7 days of “de-symbiont” treatment, treated with an environmental bacterialmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901565Gigantidas platifronsPRJNA493715SRP166032PAIREDgillAfter 7 days of “de-symbiont” treatment, treated with symbiontsmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX4901566Gigantidas platifronsPRJNA493715SRP166032PAIREDgillAfter 7 days of “de-symbiont” treatment, treated with symbiontsmethane seep on the continental slop of South China Sea1,113 Insitute of Oceanology, CASLink2019
 SRX5765411Gigantidas platifronsPRJNA540074SRP194161PAIREDgillsea water at 24hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765412Gigantidas platifronsPRJNA540074SRP194161PAIREDgillV.alginolyticus at 12hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765413Gigantidas platifronsPRJNA540074SRP194161PAIREDgillMOB at 24hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765414Gigantidas platifronsPRJNA540074SRP194161PAIREDgillV.alginolyticus at 12hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765415Gigantidas platifronsPRJNA540074SRP194161PAIREDgillsea water at 24hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765416Gigantidas platifronsPRJNA540074SRP194161PAIREDgillsea water at 24hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765417Gigantidas platifronsPRJNA540074SRP194161PAIREDgillsea water at 12hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765418Gigantidas platifronsPRJNA540074SRP194161PAIREDgillsea water at 12hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765419Gigantidas platifronsPRJNA540074SRP194161PAIREDgillMOB at 24hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765420Gigantidas platifronsPRJNA540074SRP194161PAIREDgillV.alginolyticus at 24hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765421Gigantidas platifronsPRJNA540074SRP194161PAIREDgillV.alginolyticus at 24hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765422Gigantidas platifronsPRJNA540074SRP194161PAIREDgillV.alginolyticus at 24hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765423Gigantidas platifronsPRJNA540074SRP194161PAIREDgillsea water at 12hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765424Gigantidas platifronsPRJNA540074SRP194161PAIREDgillV.alginolyticus at 12hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765425Gigantidas platifronsPRJNA540074SRP194161PAIREDgillMOB at 12hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765426Gigantidas platifronsPRJNA540074SRP194161PAIREDgillMOB at 12hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765427Gigantidas platifronsPRJNA540074SRP194161PAIREDgillMOB at 12hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX5765428Gigantidas platifronsPRJNA540074SRP194161PAIREDgillMOB at 24hcold seeps in the Formosa Ridge in the South China Sea (22°06′N, 119°17′E)1,119 insititute of oceanology, Chinese Academy of Scien346878822021
 SRX7580000Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel obtained in isobaric waycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580001Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel obtained in isobaric waycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580002Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel depressurized for 2 daycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580003Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel depressurized for 2 daycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580004Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel obtained in isobaric waycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580005Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel obtained in thermal-insulated waycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580006Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel obtained in thermal-insulated waycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580007Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel obtained in thermal-insulated waycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580008Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel repressurized for 1 daycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580009Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel repressurized for 1 daycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580010Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel obtained in thermal-insulated waycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX7580011Gigantidas platifronsPRJNA601593SRP242648PAIREDgillmussel depressurized for 2 daycold seep site F (22°06′N, 119°17′E) on the South China Sea1,119 insititute of oceanology, Chinese Academy of Scien337748742021
 SRX8715407Gigantidas platifronsPRJNA645703SRP271481PAIREDgillEB1South China Sea Cold-seep expedition at the "F-site" of Jiulong reef (20° 06'57.144 N, 119° 17'6.580 E)1,113 Insitute of Oceanology, CAS333645832020
 SRX8715408Gigantidas platifronsPRJNA645703SRP271481PAIREDgillEB2South China Sea Cold-seep expedition at the "F-site" of Jiulong reef (20° 06'57.144 N, 119° 17'6.580 E)1,113 Insitute of Oceanology, CAS333645832020
 SRX8715409Gigantidas platifronsPRJNA645703SRP271481PAIREDgillEB3South China Sea Cold-seep expedition at the "F-site" of Jiulong reef (20° 06'57.144 N, 119° 17'6.580 E)1,113 Insitute of Oceanology, CAS333645832020
 SRX8715410Gigantidas platifronsPRJNA645703SRP271481PAIREDgillWG1South China Sea Cold-seep expedition at the "F-site" of Jiulong reef (20° 06'57.144 N, 119° 17'6.580 E)1,113 Insitute of Oceanology, CAS333645832020
 SRX8715411Gigantidas platifronsPRJNA645703SRP271481PAIREDgillWG2South China Sea Cold-seep expedition at the "F-site" of Jiulong reef (20° 06'57.144 N, 119° 17'6.580 E)1,113 Insitute of Oceanology, CAS333645832020
 SRX8715412Gigantidas platifronsPRJNA645703SRP271481PAIREDgillWG3South China Sea Cold-seep expedition at the "F-site" of Jiulong reef (20° 06'57.144 N, 119° 17'6.580 E)1,113 Insitute of Oceanology, CAS333645832020
 SRX8715413Gigantidas platifronsPRJNA645703SRP271481PAIREDgillWG4South China Sea Cold-seep expedition at the "F-site" of Jiulong reef (20° 06'57.144 N, 119° 17'6.580 E)1,113 Insitute of Oceanology, CAS333645832020
 SRX8715414Gigantidas platifronsPRJNA645703SRP271481PAIREDgillWG5South China Sea Cold-seep expedition at the "F-site" of Jiulong reef (20° 06'57.144 N, 119° 17'6.580 E)1,113 Insitute of Oceanology, CAS333645832020
 SRX13850049Gigantidas platifronsPRJNA740124SRP356043PAIREDAdductor muscleThe adductor muscle of the older individual rep1cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850050Gigantidas platifronsPRJNA740124SRP356043PAIREDAdductor muscleThe adductor muscle of the older individual rep2cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850051Gigantidas platifronsPRJNA740124SRP356043PAIREDAdductor muscleThe adductor muscle of the younger individual rep2cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850052Gigantidas platifronsPRJNA740124SRP356043PAIREDAdductor muscleThe adductor muscle of the younger individual rep3cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850053Gigantidas platifronsPRJNA740124SRP356043PAIREDGillThe gill of the younger individual rep1cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850054Gigantidas platifronsPRJNA740124SRP356043PAIREDGillThe gill of the younger individual rep2cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850055Gigantidas platifronsPRJNA740124SRP356043PAIREDGillThe gill of the younger individual rep3cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850056Gigantidas platifronsPRJNA740124SRP356043PAIREDMantleThe mantle of the younger individual rep1cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850057Gigantidas platifronsPRJNA740124SRP356043PAIREDMantleThe mantle of the younger individual rep2cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850058Gigantidas platifronsPRJNA740124SRP356043PAIREDMantleThe mantle of the younger individual rep3cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850059Gigantidas platifronsPRJNA740124SRP356043PAIREDAdductor muscleThe adductor muscle of the older individual rep3cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850060Gigantidas platifronsPRJNA740124SRP356043PAIREDGillThe gill of the older individual rep1cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850061Gigantidas platifronsPRJNA740124SRP356043PAIREDGillThe gill of the older individual rep2cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850062Gigantidas platifronsPRJNA740124SRP356043PAIREDGillThe gill of the older individual rep3cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850063Gigantidas platifronsPRJNA740124SRP356043PAIREDMantleThe mantle of the older individual rep1cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850064Gigantidas platifronsPRJNA740124SRP356043PAIREDMantleThe mantle of the older individual rep2cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850065Gigantidas platifronsPRJNA740124SRP356043PAIREDMantleThe mantle of the older individual rep3cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13850066Gigantidas platifronsPRJNA740124SRP356043PAIREDAdductor muscleThe adductor muscle of the younger individual rep1cold seep site on the west slope of the Okinawa Trough896 Sun Yat-sen University354399392022
 SRX13425002Gigantidas platifronsPRJNA789090SRP351042PAIREDovaryadult stage, female, rep1Site F (22°06′N, 119°17′E), a cold seep in the South China Sea1,100 Institute of oceanology, Chinese academy of sciencLink2022
 SRX13425003Gigantidas platifronsPRJNA789090SRP351042PAIREDtestisadult stage, male, rep3Site F (22°06′N, 119°17′E), a cold seep in the South China Sea1,100 Institute of oceanology, Chinese academy of sciencLink2022
 SRX13425008Gigantidas platifronsPRJNA789090SRP351042PAIREDovaryadult stage, female, rep2Site F (22°06′N, 119°17′E), a cold seep in the South China Sea1,100 Institute of oceanology, Chinese academy of sciencLink2022
 SRX13425011Gigantidas platifronsPRJNA789090SRP351042PAIREDovaryadult stage, female, rep3Site F (22°06′N, 119°17′E), a cold seep in the South China Sea1,100 Institute of oceanology, Chinese academy of sciencLink2022
 SRX13425012Gigantidas platifronsPRJNA789090SRP351042PAIREDtestisadult stage, male, rep1Site F (22°06′N, 119°17′E), a cold seep in the South China Sea1,100 Institute of oceanology, Chinese academy of sciencLink2022
 SRX13425013Gigantidas platifronsPRJNA789090SRP351042PAIREDtestisadult stage, male, rep2Site F (22°06′N, 119°17′E), a cold seep in the South China Sea1,100 Institute of oceanology, Chinese academy of sciencLink2022
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