About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama00075
Ama00076
Ama00077HIGH-AFFINITY CHOLINE TRANSPORTER 1
Ama00078PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama00079REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama00080
Ama00081HIGH-AFFINITY CHOLINE TRANSPORTER 1
Ama00082
Ama00083DYNEIN ASSEMBLY FACTOR 5, AXONEMAL
Ama00084
Ama00085UNCHARACTERIZED
Ama00087TRANSPOSON
Ama00088PUTATIVE-RELATED
Ama00091HIGH-AFFINITY CHOLINE TRANSPORTER 1
Ama00092HIGH-AFFINITY CHOLINE TRANSPORTER 1
Ama00093PUTATIVE-RELATED
Ama00095TRANSMEMBRANE PROTEIN
Ama00096COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Ama00097
Ama00098COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Ama00099TETRASPANIN
Ama00100
Ama00101
Ama00102
Ama00103EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN
Ama00105ACID PHOSPHATASE-RELATED
Ama00108PUTATIVE-RELATED
Ama00109ENDO BETA N-ACETYLGLUCOSAMINIDASE
Ama00110ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL
Ama00111
Ama00115TRICHOHYALIN-RELATED
Ama00120
Ama00125POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN
Ama00126
Ama00127MITOCHONDRIAL GLYCINE TRANSPORTER
Ama00132CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama00133
Ama00134
Ama00135POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1
Ama00144
Ama00145CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
Ama00146INHIBITOR OF APOPTOSIS
Ama00147GABA-B RECEPTOR
Ama00148ZINC FINGER PROTEIN
Ama00149TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Ama00153RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama00158
Ama00159
Ama00161
Ama00172
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