About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama00318PHD-TYPE DOMAIN-CONTAINING PROTEIN
Ama00319THAP DOMAIN PROTEIN
Ama00320
Ama00321CARBOHYDRATE SULFOTRANSFERASE 15
Ama00322
Ama00324
Ama00325EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama00326ATP-DEPENDENT DNA HELICASE
Ama00327
Ama00328REVERSE TRANSCRIPTASES
Ama00329
Ama00330FLAVIN REDUCTASE-RELATED
Ama00331ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Ama00332APYRASE
Ama00333RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
Ama00334TRANSDUCIN BETA-LIKE 3
Ama00335UBIQUITIN-CONJUGATING ENZYME E2
Ama00336PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE
Ama00337MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2
Ama00338
Ama00339ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Ama00340ATP-BINDING CASSETTE SUB-FAMILY C
Ama00341ATP-BINDING CASSETTE SUB-FAMILY C
Ama00342ATP-BINDING CASSETTE SUB-FAMILY C
Ama00343LD33804P
Ama00344DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
Ama00346
Ama00347
Ama00350
Ama00351UBIQUITIN-CONJUGATING ENZYME E2
Ama00352NEUROPEPTIDE Y RECEPTOR
Ama00353
Ama00354ENOYL-COA HYDRATASE-RELATED
Ama00355MONOCARBOXYLATE TRANSPORTER
Ama00356DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
Ama00357TWEETY-RELATED
Ama00359KELCH PROTEIN
Ama00363CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama00364
Ama00365YIPPEE DOMAIN-CONTAINING PROTEIN
Ama00366POLY ADP-RIBOSE GLYCOHYDROLASE
Ama00367
Ama00370
Ama00371TRANSPOSON
Ama00372H4 D10S170 PROTEIN-RELATED
Ama00373AGAP005361-PA
Ama00374BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Ama00375NUCLEOLAR PROTEIN 12
Ama00376CARBON CATABOLITE REPRESSOR PROTEIN 4
Ama00378GLUTAMATE DEHYDROGENASE
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