About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Mollusca (Phylum); Bivalvia (Class); Autobranchia (Subclass); Venerida (Order); Vesicomyidae (Family); Archivesica (Genus); Archivesica marissinica (Species)

Original Name

Archivesica marissinica (Chen, Okutani, Liang & Qiu, 2018)

Key Reference Paper

1. Chen C, Okutani T, Liang Q, et al. A noteworthy new species of the family Vesicomyidae from the South China Sea (Bivalvia: Glossoidea)[J]. Venus (Journal of the Malacological Society of Japan), 2018, 76(1-4): 29-37. (Chen et al., 2018)

Description

Shell thin, rather lightly-built, chalky, elongate-oval in profile, slightly attenuated in front and somewhat flared posteriorly. Shell height about a quarter of shell length. Umbo situated at about 20% anteriorly, with weakly prosogyrous beaks. External surface covered by straw-colored, varnished periostracum, which is occasionally commarginally lamellate, particularly in front of umbonal region and marginal region. Periostracum corroded behind umbonal region suggesting presence of boundary between buried portion and exposed portion. Round antero- dorsal and anterior margins gently continuous to sub-straight ventral margin. No lunule present. Posterior margin also round. A low, obscure radial ridge running from umbo to postero-ventral corner. Escutcheon not demarcated, dorso-posterior margin weakly convex, representing greatest position in shell height, and generating nearly flat area between dorsal margin and dorsal rim of radial ridge. Ligament amphidetic, strong, extending about half length from umbo to posterior tip. Calcareous fibrous layer rather weak

Etymology

meaning “Chinese Sea”

Distribution

Hitherto known only from the type locality: Haima methane seep, south off Hainan Island. 1,372–1,398 meters depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50 74,300/79.13952.8128,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama00001-
Ama00002-
Ama00003-
Ama00005FMRFAMIDE RECEPTOR-RELATED
Ama00007-
Ama00008FMRFAMIDE RECEPTOR-RELATED
Ama00009CENTROCORTIN FAMILY MEMBER
Ama00010-
Ama00011-
Ama00012-
Ama00013-
Ama00014-
Ama00015-
Ama00016-
Ama00017-
Ama00018-
Ama00019-
Ama00020-
Ama00021-
Ama00022-

Results of comparison between Archivesica marissinica and its nearshore relatives from the paper (Chi-Ho Ip et al., 2021)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
GO:0002808regulation of antibacterial peptide biosynthetic processGOBiological Process20contracted-0.037719476
GO:0043062extracellular structure organizationGOBiological Process161contracted-0.041107175
GO:0034990nuclear mitotic cohesin complexGOCellular Component47expanded-8.80E-08
GO:0044841gut granule membraneGOCellular Component45expanded-1.84E-05
GO:0044840gut granuleGOCellular Component45expanded-1.97E-05
GO:0030131clathrin adaptor complexGOCellular Component58expanded-0.000105163
GO:0000794condensed nuclear chromosomeGOCellular Component153expanded-0.000761542
GO:0000793condensed chromosomeGOCellular Component211expanded-0.001700442
GO:0030140trans-Golgi network transport vesicleGOCellular Component70expanded-0.00300581
GO:0070852cell body fiberGOCellular Component47expanded-0.022295429
GO:0005858axonemal dynein complexGOCellular Component63expanded-0.037754927
GO:0043229intracellular organelleGOCellular Component7053contracted-0.001677146
GO:0043226organelleGOCellular Component7193contracted-0.003556602
GO:0071944cell peripheryGOCellular Component2593contracted-0.004404746
GO:0005576extracellular regionGOCellular Component917contracted-0.017757658
GO:0005622intracellularGOCellular Component8077contracted-0.018650016
GO:0005886plasma membraneGOCellular Component2472contracted-0.019523938
GO:0044424intracellular partGOCellular Component8048contracted-0.021364134
GO:0044421extracellular region partGOCellular Component607contracted-0.023789023
GO:0005634nucleusGOCellular Component3938contracted-0.038569514
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