The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Animalia (Kingdom); Mollusca (Phylum); Bivalvia (Class); Autobranchia (Subclass); Venerida (Order); Vesicomyidae (Family); Archivesica (Genus); Archivesica marissinica (Species)
Archivesica marissinica (Chen, Okutani, Liang & Qiu, 2018)
1. Chen C, Okutani T, Liang Q, et al. A noteworthy new species of the family Vesicomyidae from the South China Sea (Bivalvia: Glossoidea)[J]. Venus (Journal of the Malacological Society of Japan), 2018, 76(1-4): 29-37. (Chen et al., 2018)
Shell thin, rather lightly-built, chalky, elongate-oval in profile, slightly attenuated in front and somewhat flared posteriorly. Shell height about a quarter of shell length. Umbo situated at about 20% anteriorly, with weakly prosogyrous beaks. External surface covered by straw-colored, varnished periostracum, which is occasionally commarginally lamellate, particularly in front of umbonal region and marginal region. Periostracum corroded behind umbonal region suggesting presence of boundary between buried portion and exposed portion. Round antero- dorsal and anterior margins gently continuous to sub-straight ventral margin. No lunule present. Posterior margin also round. A low, obscure radial ridge running from umbo to postero-ventral corner. Escutcheon not demarcated, dorso-posterior margin weakly convex, representing greatest position in shell height, and generating nearly flat area between dorsal margin and dorsal rim of radial ridge. Ligament amphidetic, strong, extending about half length from umbo to posterior tip. Calcareous fibrous layer rather weak
meaning “Chinese Sea”
Hitherto known only from the type locality: Haima methane seep, south off Hainan Island. 1,372–1,398 meters depth
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
---|---|---|---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50 | 74,300/79.1 | 39 | 52.81 | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama00001 | - |
Ama00002 | - |
Ama00003 | - |
Ama00005 | FMRFAMIDE RECEPTOR-RELATED |
Ama00007 | - |
Ama00008 | FMRFAMIDE RECEPTOR-RELATED |
Ama00009 | CENTROCORTIN FAMILY MEMBER |
Ama00010 | - |
Ama00011 | - |
Ama00012 | - |
Ama00013 | - |
Ama00014 | - |
Ama00015 | - |
Ama00016 | - |
Ama00017 | - |
Ama00018 | - |
Ama00019 | - |
Ama00020 | - |
Ama00021 | - |
Ama00022 | - |
Annotation ID | Description | Type | Subtype | GeneRatio | Evolution Type | P-value | Q-value |
---|---|---|---|---|---|---|---|
GO:0002808 | regulation of antibacterial peptide biosynthetic process | GO | Biological Process | 20 | contracted | - | 0.037719476 |
GO:0043062 | extracellular structure organization | GO | Biological Process | 161 | contracted | - | 0.041107175 |
GO:0034990 | nuclear mitotic cohesin complex | GO | Cellular Component | 47 | expanded | - | 8.80E-08 |
GO:0044841 | gut granule membrane | GO | Cellular Component | 45 | expanded | - | 1.84E-05 |
GO:0044840 | gut granule | GO | Cellular Component | 45 | expanded | - | 1.97E-05 |
GO:0030131 | clathrin adaptor complex | GO | Cellular Component | 58 | expanded | - | 0.000105163 |
GO:0000794 | condensed nuclear chromosome | GO | Cellular Component | 153 | expanded | - | 0.000761542 |
GO:0000793 | condensed chromosome | GO | Cellular Component | 211 | expanded | - | 0.001700442 |
GO:0030140 | trans-Golgi network transport vesicle | GO | Cellular Component | 70 | expanded | - | 0.00300581 |
GO:0070852 | cell body fiber | GO | Cellular Component | 47 | expanded | - | 0.022295429 |
GO:0005858 | axonemal dynein complex | GO | Cellular Component | 63 | expanded | - | 0.037754927 |
GO:0043229 | intracellular organelle | GO | Cellular Component | 7053 | contracted | - | 0.001677146 |
GO:0043226 | organelle | GO | Cellular Component | 7193 | contracted | - | 0.003556602 |
GO:0071944 | cell periphery | GO | Cellular Component | 2593 | contracted | - | 0.004404746 |
GO:0005576 | extracellular region | GO | Cellular Component | 917 | contracted | - | 0.017757658 |
GO:0005622 | intracellular | GO | Cellular Component | 8077 | contracted | - | 0.018650016 |
GO:0005886 | plasma membrane | GO | Cellular Component | 2472 | contracted | - | 0.019523938 |
GO:0044424 | intracellular part | GO | Cellular Component | 8048 | contracted | - | 0.021364134 |
GO:0044421 | extracellular region part | GO | Cellular Component | 607 | contracted | - | 0.023789023 |
GO:0005634 | nucleus | GO | Cellular Component | 3938 | contracted | - | 0.038569514 |