About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Mollusca (Phylum); Bivalvia (Class); Autobranchia (Subclass); Venerida (Order); Vesicomyidae (Family); Archivesica (Genus); Archivesica marissinica (Species)

Original Name

Archivesica marissinica (Chen, Okutani, Liang & Qiu, 2018)

Key Reference Paper

1. Chen C, Okutani T, Liang Q, et al. A noteworthy new species of the family Vesicomyidae from the South China Sea (Bivalvia: Glossoidea)[J]. Venus (Journal of the Malacological Society of Japan), 2018, 76(1-4): 29-37. (Chen et al., 2018)

Description

Shell thin, rather lightly-built, chalky, elongate-oval in profile, slightly attenuated in front and somewhat flared posteriorly. Shell height about a quarter of shell length. Umbo situated at about 20% anteriorly, with weakly prosogyrous beaks. External surface covered by straw-colored, varnished periostracum, which is occasionally commarginally lamellate, particularly in front of umbonal region and marginal region. Periostracum corroded behind umbonal region suggesting presence of boundary between buried portion and exposed portion. Round antero- dorsal and anterior margins gently continuous to sub-straight ventral margin. No lunule present. Posterior margin also round. A low, obscure radial ridge running from umbo to postero-ventral corner. Escutcheon not demarcated, dorso-posterior margin weakly convex, representing greatest position in shell height, and generating nearly flat area between dorsal margin and dorsal rim of radial ridge. Ligament amphidetic, strong, extending about half length from umbo to posterior tip. Calcareous fibrous layer rather weak

Etymology

meaning “Chinese Sea”

Distribution

Hitherto known only from the type locality: Haima methane seep, south off Hainan Island. 1,372–1,398 meters depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50 74,300/79.13952.8128,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama00001-
Ama00002-
Ama00003-
Ama00005FMRFAMIDE RECEPTOR-RELATED
Ama00007-
Ama00008FMRFAMIDE RECEPTOR-RELATED
Ama00009CENTROCORTIN FAMILY MEMBER
Ama00010-
Ama00011-
Ama00012-
Ama00013-
Ama00014-
Ama00015-
Ama00016-
Ama00017-
Ama00018-
Ama00019-
Ama00020-
Ama00021-
Ama00022-

Results of comparison between Archivesica marissinica and its nearshore relatives from the paper (Chi-Ho Ip et al., 2021)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
GO:0003680AT DNA bindingGOMolecular Function55expanded-4.18E-06
GO:0016887ATPase activityGOMolecular Function521expanded-3.52E-05
GO:0016817hydrolase activity, acting on acid anhydridesGOMolecular Function768expanded-3.78E-05
GO:0000217DNA secondary structure bindingGOMolecular Function65expanded-0.001306987
GO:0045505dynein intermediate chain bindingGOMolecular Function77expanded-0.009711335
GO:0008569ATP-dependent microtubule motor activity, minus-end-directedGOMolecular Function60expanded-0.023701396
GO:0030276clathrin bindingGOMolecular Function93expanded-0.024272323
GO:0038024cargo receptor activityGOMolecular Function27contracted-0.032981676
ko04142LysosomeKEGG-281expanded-0.000437615
ko02010ABC transportersKEGG-107expanded-0.000518375
ko04113Meiosis - yeastKEGG-108expanded-0.003730079
ko04110Cell cycleKEGG-169expanded-0.014347613
ko04540Gap junctionKEGG-130expanded-0.013817656
ko04662B cell receptor signaling pathwayKEGG-126expanded-0.012921175
ko00531Glycosaminoglycan degradationKEGG-73expanded-0.013777705
ko04114Oocyte meiosisKEGG-190expanded-0.030314498
ko04530Tight junctionKEGG-221expanded-0.037287347
ko04071Sphingolipid signaling pathwayKEGG-130expanded-0.041295571
ko04624Toll and Imd signaling pathwayKEGG-74contracted-0.000556076
ko05152TuberculosisKEGG-163contracted-0.001209863
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