About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama05663THREE PRIME REPAIR EXONUCLEASE 1, 2
Ama05664CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT
Ama05665VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37
Ama05666TYROSINE-PROTEIN KINASE RECEPTOR
Ama05669MEIOTICALLY UP-REGULATED GENE 191 PROTEIN
Ama05672
Ama05675EF HAND DOMAIN FAMILY A1,A2-RELATED
Ama05676UNCHARACTERIZED
Ama05677PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
Ama05682CHLORIDE CHANNEL PROTEIN
Ama05687TRANSMEMBRANE PROTEIN 33
Ama05690AGAP000124-PA
Ama05691ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Ama05692
Ama05693
Ama05694ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Ama05695COILED-COIL DOMAIN-CONTAINING PROTEIN 138
Ama05696ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER
Ama05702CADHERIN-87A
Ama05710NEUROTRANSMITTER GATED ION CHANNEL
Ama05711CASPASE
Ama05712
Ama05713
Ama05714
Ama05715MITOCHONDRIA-EATING PROTEIN-RELATED
Ama05716CARBON CATABOLITE REPRESSOR PROTEIN 4
Ama05717ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Ama05718
Ama05720NEUROTRANSMITTER GATED ION CHANNEL
Ama05721E3 UBIQUITIN-PROTEIN LIGASE TRIM
Ama05723
Ama05724ETS
Ama05726WD REPEAT-CONTAINING PROTEIN 55
Ama05727RNF121 PROTEIN
Ama05728HEH2P
Ama05729MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
Ama05730
Ama05732
Ama05733PHOSPHATASE WITH HOMOLOGY TO TENSIN
Ama05735ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2
Ama05736MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7
Ama05737INVERTED FORMIN-2
Ama05738DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama05739BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Ama05740
Ama05741
Ama05742GLYCOPROTEIN HORMONE RECEPTOR
Ama05745
Ama05746
Ama05747CADHERIN-23
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