The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama05588 | |
| Ama05589 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
| Ama05590 | CADHERIN-87A |
| Ama05593 | CADHERIN-87A |
| Ama05594 | SPORE COAT PROTEIN SP85 |
| Ama05601 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| Ama05606 | MITOCHONDRIA-EATING PROTEIN-RELATED |
| Ama05607 | |
| Ama05609 | |
| Ama05611 | TUBULIN |
| Ama05613 | TUBULIN |
| Ama05614 | TUBULIN |
| Ama05615 | TUBULIN |
| Ama05617 | UNCHARACTERIZED |
| Ama05618 | UNCHARACTERIZED |
| Ama05619 | TUBULIN |
| Ama05620 | INVERTED FORMIN-2 |
| Ama05621 | TUBULIN |
| Ama05622 | |
| Ama05623 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Ama05624 | TUBULIN |
| Ama05625 | TUBULIN |
| Ama05626 | TUBULIN |
| Ama05627 | |
| Ama05628 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Ama05629 | HELIX LOOP HELIX PROTEIN 21-RELATED |
| Ama05630 | BEIGE/BEACH-RELATED |
| Ama05631 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Ama05632 | |
| Ama05633 | BEIGE/BEACH-RELATED |
| Ama05635 | SEPTIN |
| Ama05636 | WD40 REPEAT PROTEINPRL1/PRL2-RELATED |
| Ama05637 | PEPTIDASE |
| Ama05638 | PEPTIDASE |
| Ama05639 | |
| Ama05640 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama05641 | |
| Ama05643 | |
| Ama05644 | TRANSCRIPTIONAL REPRESSOR PROTEIN YY |
| Ama05645 | |
| Ama05646 | |
| Ama05647 | |
| Ama05648 | MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE |
| Ama05649 | - |
| Ama05651 | RED PROTEIN IK FACTOR CYTOKINE IK |
| Ama05657 | PROTEASOME MATURATION PROTEIN UMP1 |
| Ama05658 | MYOTUBULARIN-RELATED |
| Ama05659 | NUDIX HYDROLASE RELATED |
| Ama05660 | THIOESTERASE |
| Ama05661 |
