The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama05407 | ENDONUCLEASE-RELATED |
Ama05408 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
Ama05410 | ENDONUCLEASE-RELATED |
Ama05411 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama05413 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
Ama05414 | ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED |
Ama05415 | CBP/P300-RELATED |
Ama05416 | MITOCHONDRIA-EATING PROTEIN-RELATED |
Ama05417 | CBP/P300-RELATED |
Ama05418 | |
Ama05419 | GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE |
Ama05420 | SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 |
Ama05421 | ATP7, ISOFORM B |
Ama05423 | GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE |
Ama05424 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama05428 | LD33804P |
Ama05429 | ZINC FINGER PROTEIN |
Ama05430 | UNCHARACTERIZED |
Ama05431 | THO2 PROTEIN |
Ama05432 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama05433 | - |
Ama05434 | MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE |
Ama05435 | CARBONYL REDUCTASE 1-RELATED |
Ama05436 | CARBONYL REDUCTASE 1-RELATED |
Ama05437 | |
Ama05438 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7 |
Ama05439 | |
Ama05440 | PROTEIN CBG19621 |
Ama05441 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama05442 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama05443 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama05444 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama05445 | |
Ama05446 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama05447 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama05448 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama05449 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama05450 | |
Ama05451 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama05452 | |
Ama05453 | |
Ama05456 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama05458 | ATP-DEPENDENT DNA HELICASE |
Ama05459 | |
Ama05460 | PLACENTAL PROTEIN 6 |
Ama05461 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
Ama05462 | |
Ama05463 | |
Ama05464 | TRANSPOSON |
Ama05465 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |