The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama05028 | |
Ama05029 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama05030 | TRANSPOSON |
Ama05031 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama05033 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama05034 | THAP DOMAIN PROTEIN |
Ama05035 | |
Ama05036 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama05037 | THAP DOMAIN PROTEIN |
Ama05038 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama05040 | |
Ama05041 | |
Ama05049 | |
Ama05050 | BETA-AMYLOID BINDING PROTEIN-RELATED |
Ama05053 | SIMILAR TO RIKEN CDNA E130308A19 |
Ama05054 | - |
Ama05055 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama05056 | |
Ama05057 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
Ama05058 | INHIBITOR OF APOPTOSIS |
Ama05059 | |
Ama05060 | |
Ama05061 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama05062 | INHIBITOR OF APOPTOSIS |
Ama05063 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05065 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05066 | |
Ama05067 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED |
Ama05068 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama05069 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05070 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05071 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05072 | IONOTROPIC GLUTAMATE RECEPTOR |
Ama05073 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05074 | |
Ama05077 | IONOTROPIC GLUTAMATE RECEPTOR |
Ama05078 | IONOTROPIC GLUTAMATE RECEPTOR |
Ama05080 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05081 | IONOTROPIC GLUTAMATE RECEPTOR |
Ama05082 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05084 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05085 | EPITHELIAL MEMBRANE PROTEIN-RELATED |
Ama05087 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05089 | PLASMINOGEN-RELATED |
Ama05090 | PLASMINOGEN-RELATED |
Ama05091 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
Ama05093 | ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS |
Ama05096 | TYROSINE-PROTEIN KINASE |
Ama05099 | |
Ama05100 | FIP1-LIKE 1 PROTEIN |