The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama04778 | CARBONIC ANHYDRASE |
Ama04779 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 |
Ama04780 | PERICENTRIOLAR MATERIAL 1-RELATED |
Ama04781 | LEUCINE RICH REPEAT FAMILY PROTEIN |
Ama04782 | TRANSLATION FACTOR GUF1-RELATED |
Ama04783 | |
Ama04784 | |
Ama04786 | |
Ama04787 | GEM-ASSOCIATED PROTEIN 5 |
Ama04789 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
Ama04790 | NEDD4-BINDING PROTEIN 2 |
Ama04791 | SPERMATOGENESIS-ASSOCIATED 4-RELATED |
Ama04792 | PROTEIN DISPATCHED-RELATED |
Ama04793 | |
Ama04794 | PROTEIN DISPATCHED-RELATED |
Ama04795 | CYTOSKELETON ASSOCIATED PROTEIN 2-RELATED |
Ama04796 | FUKUTIN RELATED PROTEIN |
Ama04797 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama04798 | GTP-BINDING PROTEIN 8 |
Ama04799 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama04800 | 60S RIBOSOMAL PROTEIN L21 |
Ama04801 | BOMB/KIRA PROTEINS |
Ama04802 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama04804 | ANAPHASE-PROMOTING COMPLEX 10 |
Ama04805 | PERIOSTIN-RELATED |
Ama04806 | MORTALITY FACTOR 4-LIKE PROTEIN |
Ama04807 | 40S RIBOSOMAL PROTEIN S3A |
Ama04808 | BONUS, ISOFORM C-RELATED |
Ama04809 | UBIQUITIN-CONJUGATING ENZYME E2 |
Ama04810 | |
Ama04811 | UPF0315 PROTEIN-RELATED |
Ama04812 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
Ama04813 | |
Ama04814 | |
Ama04815 | |
Ama04816 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Ama04817 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Ama04818 | |
Ama04819 | |
Ama04820 | THAP DOMAIN PROTEIN |
Ama04821 | |
Ama04822 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama04823 | |
Ama04824 | CCHC-TYPE DOMAIN-CONTAINING PROTEIN |
Ama04833 | IONOTROPIC GLUTAMATE RECEPTOR |
Ama04835 | |
Ama04836 | PROTEIN DIAPHANOUS |
Ama04837 | |
Ama04838 | UFM1-SPECIFIC PROTEASE 2 |
Ama04839 |