The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama04434 | |
| Ama04435 | |
| Ama04436 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04437 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04438 | |
| Ama04439 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04440 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04441 | |
| Ama04442 | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama04443 | |
| Ama04445 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04446 | SCAVENGER RECEPTOR CLASS F |
| Ama04447 | |
| Ama04448 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04449 | |
| Ama04450 | |
| Ama04451 | |
| Ama04452 | SCAVENGER RECEPTOR CLASS F |
| Ama04453 | SCAVENGER RECEPTOR CLASS F |
| Ama04454 | TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED |
| Ama04456 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04457 | |
| Ama04458 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04459 | |
| Ama04460 | |
| Ama04461 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04462 | SCAVENGER RECEPTOR CLASS F |
| Ama04463 | |
| Ama04464 | |
| Ama04465 | |
| Ama04466 | ZGC:195170 |
| Ama04467 | |
| Ama04468 | |
| Ama04469 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama04470 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04474 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04475 | |
| Ama04477 | PEPTIDASE |
| Ama04478 | PEPTIDASE |
| Ama04481 | |
| Ama04482 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04483 | |
| Ama04484 | |
| Ama04485 | |
| Ama04486 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04487 | T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN |
| Ama04488 | PROTEIN CBG22215 |
| Ama04489 | |
| Ama04490 | |
| Ama04491 |
