About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama04287
Ama04288-
Ama04290
Ama04291
Ama04292L1 TRANSPOSABLE ELEMENT-RELATED
Ama04293
Ama04295
Ama04296STEROID RECEPTOR RNA ACTIVATOR 1
Ama04297REVERSE TRANSCRIPTASES
Ama04298INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Ama04299
Ama04300STROMAL INTERACTION MOLECULE HOMOLOG
Ama04301POLYCOMB GROUP PROTEIN
Ama04303LIPOXYGENASE
Ama04304PLAT DOMAIN-CONTAINING PROTEIN
Ama04305PUTATIVE-RELATED
Ama04306PLAT DOMAIN-CONTAINING PROTEIN
Ama04307PLAT DOMAIN-CONTAINING PROTEIN
Ama04308PROTEIN CBG12474
Ama04309UPF0547 PROTEIN C16ORF87
Ama04311
Ama04312RWD DOMAIN CONTAINING PROTEIN 2
Ama04313RWD DOMAIN CONTAINING PROTEIN 2
Ama04314
Ama04315FURRY-RELATED
Ama04316FURRY-RELATED
Ama04317FURRY-RELATED
Ama04318SORTING NEXIN
Ama04321ANKYRIN REPEAT FAMILY PROTEIN
Ama04322THAP DOMAIN PROTEIN
Ama04323EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama04324PHD-TYPE DOMAIN-CONTAINING PROTEIN
Ama04325NUCLEOSIDE DIPHOSPHATE KINASE
Ama04326ARFAPTIN-RELATED
Ama04328GLUCOSAMINE-6-PHOSPHATE ISOMERASE
Ama04329ATP-DEPENDENT CLP PROTEASE
Ama04330UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Ama04331
Ama04334INVERTED FORMIN-2
Ama04335CRAMPED PROTEIN
Ama04336SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED
Ama04337NEUROTRANSMITTER GATED ION CHANNEL
Ama04339ENDONUCLEASE-RELATED
Ama04340T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Ama04341IONOTROPIC GLUTAMATE RECEPTOR
Ama04362IONOTROPIC GLUTAMATE RECEPTOR
Ama04363
Ama04368NEUROTRANSMITTER GATED ION CHANNEL
Ama04371UNCHARACTERIZED
Ama04372RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C
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