About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama04155
Ama04156DOUBLECORTIN DOMAIN CONTAINING 2
Ama04157LD33804P
Ama04158UNCHARACTERIZED
Ama04159
Ama04160TOLL-LIKE RECEPTOR
Ama04161
Ama04162
Ama04164INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Ama04165
Ama04166PROTEIN CBG10425
Ama041672-HYDROXYACID DEHYDROGENASE-RELATED
Ama04168SPHINGOSINE KINASE
Ama04169
Ama04170BTB POZ DOMAIN CONTAINING 12
Ama04171CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama04174DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama04175
Ama04176UNCHARACTERIZED
Ama04177
Ama04178REGULATOR OF CHROMOSOME CONDENSATION
Ama04181
Ama04183
Ama04184TRANSIENT RECEPTOR POTENTIAL CHANNEL
Ama04186OLIGOPHRENIN 1
Ama04188OLIGOPHRENIN 1
Ama04189ZINC FINGER PROTEIN 330
Ama04190THAP DOMAIN PROTEIN
Ama04191OLIGORIBONUCLEASE, MITOCHONDRIAL
Ama04192AGAP005574-PA
Ama04193ZGC:195170
Ama04194LUPUS LA PROTEIN-RELATED
Ama04195REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama04196REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama04197RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C
Ama04199
Ama04202RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C
Ama04204ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Ama04205ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Ama04206REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama04207
Ama04208RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama04209
Ama04210
Ama0421160S RIBOSOMAL PROTEIN L27
Ama04212TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Ama04213CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama04214
Ama04215
Ama04216
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