The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama03673 | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama03674 | MACROGLOBULIN / COMPLEMENT |
| Ama03675 | MACROGLOBULIN / COMPLEMENT |
| Ama03676 | |
| Ama03677 | |
| Ama03678 | MACROGLOBULIN / COMPLEMENT |
| Ama03679 | 60S RIBOSOMAL PROTEIN L31 |
| Ama03680 | |
| Ama03681 | RW1 PROTEIN HOMOLOG |
| Ama03682 | ENGULFMENT AND CELL MOTILITY |
| Ama03683 | KINASE D-INTERACTING SUBSTRATE OF 220 KDA |
| Ama03687 | |
| Ama03689 | TRYPTOPHAN 2,3-DIOXYGENASE |
| Ama03690 | - |
| Ama03691 | |
| Ama03694 | |
| Ama03695 | RAI16 PROTEIN-RELATED |
| Ama03697 | |
| Ama03702 | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN |
| Ama03704 | LIM DOMAIN ONLY 7 |
| Ama03705 | |
| Ama03706 | |
| Ama03707 | 14-3-3 PROTEIN |
| Ama03709 | DNA-DIRECTED RNA POLYMERASE |
| Ama03710 | |
| Ama03711 | CELLULOSE SYNTHASE OPERON PROTEIN C |
| Ama03712 | |
| Ama03713 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| Ama03714 | |
| Ama03715 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
| Ama03716 | - |
| Ama03717 | PRE-MRNA CLEAVAGE COMPLEX II |
| Ama03718 | PRE-MRNA CLEAVAGE COMPLEX II |
| Ama03719 | RAS-RELATED PROTEIN RAB |
| Ama03720 | PASIFLORA 1, ISOFORM A-RELATED |
| Ama03721 | |
| Ama03722 | THAP DOMAIN PROTEIN |
| Ama03723 | PROTEIN CBG05606 |
| Ama03724 | |
| Ama03726 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
| Ama03727 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama03729 | |
| Ama03730 | |
| Ama03731 | |
| Ama03732 | CADHERIN-87A |
| Ama03734 | |
| Ama03735 | CADHERIN-87A |
| Ama03736 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Ama03737 | |
| Ama03738 |
