The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama03598 | |
Ama03601 | NF-KAPPA-B INHIBITOR ALPHA |
Ama03602 | NF-KAPPA-B INHIBITOR ALPHA |
Ama03603 | UDP-GLUCOSE 4-EPIMERASE |
Ama03604 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
Ama03605 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
Ama03606 | |
Ama03607 | CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED |
Ama03608 | CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED |
Ama03609 | CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED |
Ama03610 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama03611 | CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED |
Ama03612 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
Ama03613 | VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA21 |
Ama03614 | COMM DOMAIN CONTAINING PROTEIN 5 |
Ama03615 | METHYLMALONYL-COA MUTASE |
Ama03616 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
Ama03617 | CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED |
Ama03625 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
Ama03627 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB |
Ama03629 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
Ama03630 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
Ama03631 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
Ama03632 | |
Ama03633 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
Ama03634 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
Ama03635 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
Ama03636 | |
Ama03637 | BETA-MICROSEMINOPROTEIN |
Ama03638 | |
Ama03639 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
Ama03641 | |
Ama03643 | THROMBOSPONDIN TYPE I DOMAIN-CONTAINING 1 |
Ama03646 | WD40 REPEAT DOMAIN 95 |
Ama03650 | |
Ama03651 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
Ama03652 | |
Ama03656 | PUTATIVE-RELATED |
Ama03657 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
Ama03658 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama03659 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama03661 | |
Ama03662 | |
Ama03664 | |
Ama03666 | MITOCHONDRIA-EATING PROTEIN-RELATED |
Ama03667 | |
Ama03668 | COILED-COIL DOMAIN-CONTAINING PROTEIN 158 |
Ama03670 | COILED-COIL DOMAIN-CONTAINING PROTEIN 158 |
Ama03671 | COILED-COIL DOMAIN-CONTAINING PROTEIN 158 |
Ama03672 | CEREBELLIN-RELATED |