About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama03394ADENYLATE CYCLASE TYPE 1
Ama03395
Ama03396
Ama03397EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama03398THAP DOMAIN PROTEIN
Ama03399
Ama03401RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama03407
Ama03409TRANSIENT RECEPTOR POTENTIAL CHANNEL
Ama03410TRANSIENT RECEPTOR POTENTIAL CHANNEL
Ama03411PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama03413
Ama03414VERTNIN
Ama03415
Ama03416TRANSCRIPTION FACTOR SPT20 HOMOLOG
Ama03419RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
Ama03420PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Ama03421
Ama03422
Ama03423HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Ama03424
Ama03426KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Ama03427PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
Ama03428PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
Ama03430
Ama03431COMPLEX III ASSEMBLY FACTOR LYRM7
Ama03433CYSTEINE PROTEASE FAMILY C1-RELATED
Ama0343430S/40S RIBOSOMAL PROTEIN S3
Ama03435RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR
Ama03436RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR
Ama03437CADHERIN-87A
Ama03439REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama03441CADHERIN-87A
Ama03442
Ama03443ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Ama03444
Ama03445
Ama03446TRANSMEMBRANE PROTEIN 232
Ama03451UNCHARACTERIZED
Ama03452
Ama03453REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama03454
Ama03455
Ama03458SPROUTY
Ama034592-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
Ama03460
Ama03461NEDD4 FAMILY INTERACTING PROTEIN 1/2
Ama03462LYMPHOID-SPECIFIC HELICASE
Ama03463
Ama03465
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