The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama04656 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04657 | |
| Ama04658 | |
| Ama04662 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04664 | PEPTIDASE |
| Ama04665 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04666 | |
| Ama04667 | |
| Ama04669 | SCAVENGER RECEPTOR CLASS F |
| Ama04670 | IP13529P |
| Ama04671 | |
| Ama04672 | |
| Ama04673 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04674 | |
| Ama04675 | |
| Ama04676 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04677 | |
| Ama04678 | PEPTIDASE |
| Ama04679 | |
| Ama04680 | |
| Ama04681 | |
| Ama04682 | SCAVENGER RECEPTOR CLASS F |
| Ama04683 | MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN |
| Ama04684 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04685 | |
| Ama04686 | PROTEIN CBG22215 |
| Ama04687 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama04688 | INHIBITOR OF APOPTOSIS |
| Ama04689 | |
| Ama04692 | |
| Ama04693 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04694 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama04695 | SCAVENGER RECEPTOR CLASS F |
| Ama04697 | |
| Ama04698 | - |
| Ama04699 | |
| Ama04700 | |
| Ama04701 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama04702 | |
| Ama04704 | |
| Ama04705 | |
| Ama04707 | |
| Ama04708 | |
| Ama04709 | |
| Ama04710 | |
| Ama04711 | |
| Ama04712 | PLASMINOGEN-RELATED |
| Ama04713 | PLASMINOGEN-RELATED |
| Ama04714 | |
| Ama04715 | UNNAMED PRODUCT |
