About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama04579
Ama04580THAP DOMAIN PROTEIN
Ama04581POL PROTEIN
Ama04582CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Ama04583PROTEIN CBG22215
Ama04584EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama04585
Ama04586
Ama0458852 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Ama04590CS DOMAIN-CONTAINING PROTEIN
Ama0459126S PROTEASOME REGULATORY SUBUNIT
Ama04592T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Ama04593
Ama04595TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE
Ama04596-
Ama04597
Ama04598TRANSPOSON
Ama04599OLIGORIBONUCLEASE, MITOCHONDRIAL
Ama04600RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama04601
Ama046033-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
Ama04604
Ama04605
Ama04606FTP DOMAIN-CONTAINING PROTEIN
Ama04607RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Ama04617SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Ama04621SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Ama04623NEUROTRANSMITTER GATED ION CHANNEL
Ama04624
Ama04626
Ama04627
Ama04631SCAVENGER RECEPTOR CLASS F
Ama04632T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Ama04633PROTEIN CBG22215
Ama04634INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Ama04635FTP DOMAIN-CONTAINING PROTEIN
Ama04636PROTEIN CBG22215
Ama04637RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Ama04638RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Ama04639PROTEIN CBG22215
Ama04640SCAVENGER RECEPTOR CLASS F
Ama04642FTP DOMAIN-CONTAINING PROTEIN
Ama04643PROTEIN CBG22215
Ama04644
Ama04645
Ama04648
Ama04651
Ama04653REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama04654NEUROTRANSMITTER GATED ION CHANNEL
Ama04655RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
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