The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama04963 | PHOSPHORYN, PUTATIVE-RELATED-RELATED |
Ama04964 | FRG1 PROTEIN |
Ama04965 | SI:DKEY-19B23.12-RELATED |
Ama04966 | G-PROTEIN COUPLED RECEPTOR |
Ama04969 | CALRETICULIN AND CALNEXIN |
Ama04970 | SPARTIN |
Ama04971 | ORGANIC SOLUTE TRANSPORTER-RELATED |
Ama04973 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama04975 | PROTON CHANNEL OTOP |
Ama04976 | |
Ama04977 | |
Ama04978 | |
Ama04980 | PROTON CHANNEL OTOP |
Ama04981 | F-BOX/WD REPEAT-CONTAINING PROTEIN 5 |
Ama04982 | |
Ama04984 | |
Ama04985 | |
Ama04986 | |
Ama04987 | |
Ama04988 | PROTEIN CBG10425 |
Ama04989 | INHIBITOR OF APOPTOSIS |
Ama04990 | PROTEIN CBG23766 |
Ama04991 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama04994 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama04995 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama04996 | ZINC FINGER PROTEIN |
Ama04997 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
Ama04998 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
Ama04999 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama05000 | MITOCHONDRIA-EATING PROTEIN-RELATED |
Ama05001 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
Ama05002 | CENTROSOMAL PROTEIN CEP135 |
Ama05006 | CADHERIN-87A |
Ama05007 | D-DOPACHROME DECARBOXYLASE |
Ama05008 | |
Ama05009 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama05011 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama05012 | |
Ama05013 | PROTEIN CBG23764 |
Ama05014 | UNNAMED PRODUCT |
Ama05015 | |
Ama05016 | |
Ama05017 | |
Ama05018 | UNNAMED PRODUCT |
Ama05019 | PROTEIN CBG22215 |
Ama05020 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama05024 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN |
Ama05025 | PYRAZINAMIDASE/NICOTINAMIDASE |
Ama05026 | - |
Ama05027 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |