The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama05824 | |
Ama05825 | |
Ama05826 | BONUS, ISOFORM C-RELATED |
Ama05827 | CYTOCHROME P450 508A4-RELATED |
Ama05828 | |
Ama05829 | UNCHARACTERIZED |
Ama05831 | |
Ama05832 | |
Ama05834 | |
Ama05837 | RAS-LIKE FAMILY MEMBER 11 |
Ama05838 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
Ama05846 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama05848 | - |
Ama05851 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama05852 | |
Ama05853 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama05854 | |
Ama05857 | - |
Ama05865 | |
Ama05866 | UNCHARACTERIZED |
Ama05867 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama05868 | FORKHEAD BOX PROTEIN BINIOU |
Ama05871 | UNCHARACTERIZED |
Ama05872 | UNCHARACTERIZED |
Ama05873 | |
Ama05874 | UNCHARACTERIZED |
Ama05875 | |
Ama05876 | UNCHARACTERIZED |
Ama05877 | DEP DOMAIN-CONTAINING |
Ama05879 | NUCLEAR RESPIRATORY FACTOR 1 |
Ama05881 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
Ama05882 | FANCONI-ASSOCIATED NUCLEASE 1 |
Ama05883 | FANCONI-ASSOCIATED NUCLEASE 1 |
Ama05884 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
Ama05885 | |
Ama05886 | |
Ama05887 | TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN |
Ama05888 | G-PROTEIN COUPLED RECEPTOR |
Ama05890 | |
Ama05891 | PROTEIN CBG22215 |
Ama05892 | G-PROTEIN COUPLED RECEPTOR |
Ama05894 | |
Ama05895 | G-PROTEIN COUPLED RECEPTOR |
Ama05897 | DIMETHYLANILINE MONOOXYGENASE |
Ama05898 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama05901 | TRANSPOSABLE ELEMENT-RELATED |
Ama05903 | VILLIN |
Ama05904 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama05905 | |
Ama05906 |