The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama05984 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama05985 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
Ama05986 | ALDEHYDE DEHYDROGENASE-RELATED |
Ama05987 | UNCHARACTERIZED |
Ama05988 | WD REPEAT DOMAIN-CONTAINING FAMILY |
Ama05989 | MALIC ENZYME-RELATED |
Ama05990 | PYRIDOXAL KINASE |
Ama05991 | SUGAR HYDROLASE-RELATED |
Ama05994 | ANOCTAMIN |
Ama05996 | |
Ama05997 | |
Ama05998 | MYOGENIC FACTOR |
Ama06001 | WD REPEAT DOMAIN 9 |
Ama06002 | WD REPEAT DOMAIN 9 |
Ama06003 | UNCHARACTERIZED |
Ama06004 | |
Ama06005 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama06010 | RAS-LIKE FAMILY MEMBER 11 |
Ama06011 | |
Ama06012 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Ama06013 | UNCHARACTERIZED |
Ama06014 | PEPTIDASE |
Ama06015 | PEPTIDASE |
Ama06016 | INHIBITOR OF APOPTOSIS |
Ama06017 | UNCHARACTERIZED |
Ama06019 | GC-RICH SEQUENCE DNA-BINDING FACTOR |
Ama06020 | GC-RICH SEQUENCE DNA-BINDING FACTOR |
Ama06021 | |
Ama06022 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
Ama06023 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
Ama06025 | |
Ama06026 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
Ama06027 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
Ama06028 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
Ama06029 | ARRESTIN DOMAIN CONTAINING PROTEIN |
Ama06032 | CELL DIVISION PROTEIN KINASE |
Ama06033 | |
Ama06034 | |
Ama06036 | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER |
Ama06037 | DUF853 DOMAIN-CONTAINING PROTEIN |
Ama06038 | TAIL-ANCHORED PROTEIN INSERTION RECEPTOR WRB |
Ama06039 | DIHYDROANTICAPSIN 7-DEHYDROGENASE |
Ama06041 | EXPORTIN 4,7-RELATED |
Ama06042 | BONUS, ISOFORM C-RELATED |
Ama06044 | BITESIZE, ISOFORM I |
Ama06046 | TRICHOHYALIN |
Ama06048 | PROTEIN LIN-28 |
Ama06049 | MONOCARBOXYLATE TRANSPORTER |
Ama06050 | |
Ama06051 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |