The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama05748 | CADHERIN-23 |
Ama05750 | |
Ama05754 | PHOSPHOGLYCERATE KINASE |
Ama05755 | PHOSPHOGLYCERATE KINASE |
Ama05756 | PHOSPHOGLYCERATE KINASE |
Ama05759 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B |
Ama05762 | PALMITOYLTRANSFERASE ZDHHC16 |
Ama05764 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama05765 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama05766 | INHIBITOR OF APOPTOSIS |
Ama05767 | TRANSPOSON |
Ama05768 | CARBOHYDRATE SULFOTRANSFERASE 15 |
Ama05769 | |
Ama05772 | |
Ama05773 | |
Ama05774 | |
Ama05775 | UNCHARACTERIZED |
Ama05778 | CARBONIC ANHYDRASE |
Ama05779 | |
Ama05780 | - |
Ama05781 | |
Ama05782 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama05783 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama05784 | |
Ama05786 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama05787 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama05788 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama05789 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama05791 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
Ama05792 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama05793 | |
Ama05795 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama05796 | LEUCINE RICH REPEAT FAMILY PROTEIN |
Ama05797 | |
Ama05798 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
Ama05802 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
Ama05803 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama05804 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C |
Ama05805 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT |
Ama05806 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT |
Ama05808 | ANKYRIN REPEAT PROTEIN |
Ama05809 | PROTEIN CBG22215 |
Ama05810 | |
Ama05812 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama05813 | ALKYL/ARYL-SULFATASE |
Ama05814 | |
Ama05815 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN |
Ama05821 | BONUS, ISOFORM C-RELATED |
Ama05822 | |
Ama05823 | BONUS, ISOFORM C-RELATED |