The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama06234 | RIBONUCLEASE H1 |
Ama06235 | DUF614 FAMILY PROTEIN-RELATED |
Ama06236 | EXPRESSED PROTEIN |
Ama06237 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
Ama06238 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
Ama06239 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama06242 | |
Ama06243 | |
Ama06244 | FOLATE RECEPTOR |
Ama06245 | NUCLEAR HORMONE RECEPTOR |
Ama06246 | |
Ama06247 | MEDIATOR COMPLEX SUBUNIT |
Ama06248 | CHEMOKINE C-C MOTIF RECEPTOR 1 |
Ama06249 | XAA-PRO AMINOPEPTIDASE 1 |
Ama06251 | PUTATIVE-RELATED |
Ama06252 | |
Ama06253 | |
Ama06258 | |
Ama06259 | HISTONE DEACETYLASE HDAC1-RELATED |
Ama06260 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama06261 | LP04239P |
Ama06262 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama06263 | |
Ama06264 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama06266 | INHIBITOR OF APOPTOSIS |
Ama06267 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama06268 | SERINE/THREONINE-PROTEIN KINASE ATM |
Ama06269 | SERINE/THREONINE-PROTEIN KINASE ATM |
Ama06270 | ASSOCIATE OF C-MYC AMY-1 |
Ama06271 | BAND 7 PROTEIN-RELATED |
Ama06272 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
Ama06273 | PF6 |
Ama06275 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL |
Ama06276 | OXIDORED-NITRO DOMAIN-CONTAINING PROTEIN |
Ama06277 | - |
Ama06282 | |
Ama06283 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama06286 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama06287 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama06288 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
Ama06289 | ATP-DEPENDENT DNA HELICASE |
Ama06290 | THAP DOMAIN PROTEIN |
Ama06291 | |
Ama06292 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama06294 | NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE |
Ama06295 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
Ama06296 | NADH-UBIQUINONE OXIDOREDUCTASE ASHI SUBUNIT |
Ama06297 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I |
Ama06298 | TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 |
Ama06299 | THAP DOMAIN PROTEIN |