The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama06300 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
Ama06301 | PROTEIN MMS22-LIKE |
Ama06302 | HISTIDINE TRIAD HIT PROTEIN |
Ama06303 | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED |
Ama06304 | BCL-2-LIKE PROTEIN 13 |
Ama06306 | |
Ama06307 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama06308 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama06309 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama06310 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama06311 | |
Ama06312 | G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN |
Ama06313 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama06314 | INHIBITOR OF APOPTOSIS |
Ama06315 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama06316 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Ama06317 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Ama06318 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
Ama06319 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
Ama06321 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Ama06322 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Ama06323 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Ama06324 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Ama06325 | VWFA DOMAIN-CONTAINING PROTEIN |
Ama06326 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER |
Ama06327 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama06328 | CITRATE LYASE SUBUNIT BETA-RELATED |
Ama06330 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
Ama06334 | DNA POLYMERASE I |
Ama06336 | |
Ama06337 | DNA POLYMERASE I |
Ama06338 | DNA POLYMERASE I |
Ama06341 | |
Ama06342 | FTP DOMAIN-CONTAINING PROTEIN |
Ama06343 | PROPERDIN |
Ama06345 | GLYCOPROTEIN HORMONE RECEPTOR |
Ama06346 | |
Ama06347 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B |
Ama06348 | |
Ama06349 | SI:CH211-171H4.7-RELATED |
Ama06350 | TUBBY-RELATED |
Ama06351 | TUBBY-RELATED |
Ama06352 | |
Ama06354 | WD REPEAT DOMAIN-RELATED |
Ama06358 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama06359 | |
Ama06360 | |
Ama06362 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
Ama06364 | |
Ama06365 | UNCHARACTERIZED |