About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama577_5db7b01aPROTEIN DISULFIDE-ISOMERASE TMX3
Ama578_5db7b01a
Ama579_5db7b01aLIPID PHOSPHATE PHOSPHATASE
Ama580_5db7b01aHYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Ama581_5db7b01aPDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
Ama582_5db7b01aPROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
Ama583_5db7b01aUNCHARACTERIZED
Ama588_5db7b01aSIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
Ama58_5db7b01aTRANSPOSON TY3-I GAG-POL POLYPROTEIN
Ama590_5db7b01aCOMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Ama592_5db7b01a
Ama593_5db7b01aHEAT SHOCK PROTEIN HSP-12.2-RELATED
Ama595_5db7b01a
Ama596_5db7b01aSH3 MULTIPLE DOMAIN
Ama597_5db7b01aEG:80H7.2 PROTEIN
Ama598_5db7b01a
Ama599_5db7b01aSUPEROXIDE DISMUTASE CU-ZN -RELATED
Ama59_5db7b01aMONOCARBOXYLATE TRANSPORTER
Ama5_5db7b01a
Ama5_5db84494METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE
Ama601_5db7b01aZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Ama602_5db7b01aNXPE FAMILY MEMBER
Ama606_5db7b01aINTEGRASE CORE DOMAIN CONTAINING PROTEIN
Ama607_5db7b01aDNA POLYMERASE DELTA SUBUNIT 4
Ama608_5db7b01a
Ama609_5db7b01aRHOPHILIN
Ama60_5db7b01aZINC FINGER PROTEIN
Ama610_5db7b01aDENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Ama613_5db7b01aSET DOMAIN-CONTAINING PROTEIN-RELATED
Ama614_5db7b01aRIBOSOMAL PROTEIN S6 KINASE
Ama617_5db7b01a
Ama618_5db7b01aUBIQUITIN-CONJUGATING ENZYME E2
Ama619_5db7b01aG PATCH DOMAIN CONTAINING PROTEIN
Ama61_5db7b01aNEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Ama621_5db7b01aPHOSPHOLIPID SCRAMBLASE-RELATED
Ama624_5db7b01aNICOLIN 1
Ama625_5db7b01aMETHIONINE AMINOPEPTIDASE 2
Ama626_5db7b01a
Ama627_5db7b01aSULFIDE:QUINONE OXIDOREDUCTASE
Ama628_5db7b01aPORCUPINE
Ama629_5db7b01aMIDKINE AND PLEIOTROPHIN 1, ISOFORM A-RELATED
Ama62_5db7b01aTRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Ama630_5db7b01aUBIQUITIN-CONJUGATING ENZYME E2
Ama631_5db7b01aMYD88
Ama634_5db7b01aTETRASPANIN
Ama635_5db7b01a
Ama636_5db7b01aRIBOSOME BIOGENESIS PROTEIN
Ama637_5db7b01a
Ama638_5db7b01a
Ama63_5db7b01aD-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH
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