The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama511_5db7b01a | MITOCHONDRIAL RIBOSOMAL PROTEIN S23 |
Ama512_5db7b01a | 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
Ama513_5db7b01a | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
Ama514_5db7b01a | N-ACETYLTRANSFERASE-RELATED |
Ama515_5db7b01a | SWAP-70 RECOMBINASE |
Ama517_5db7b01a | WNT RELATED |
Ama518_5db7b01a | METALLOPROTEASE INHIBITOR |
Ama519_5db7b01a | ENDONUCLEASE-RELATED |
Ama51_5db7b01a | E3 UBIQUITIN-PROTEIN LIGASE ATL42 |
Ama520_5db7b01a | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
Ama521_5db7b01a | RING FINGER PROTEIN 17 |
Ama522_5db7b01a | |
Ama524_5db7b01a | |
Ama525_5db7b01a | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN |
Ama526_5db7b01a | APPLE DOMAIN-CONTAINING PROTEIN |
Ama527_5db7b01a | NADH-UBIQUINONE OXIDOREDUCTASE ESSS SUBUNIT, MITOCHONDRIAL PRECURSOR |
Ama528_5db7b01a | PROTRUDIN |
Ama530_5db7b01a | PROTEIN CBG11604 |
Ama532_5db7b01a | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Ama533_5db7b01a | MYND-TYPE ZINC FINGER PROTEIN MUB1 |
Ama534_5db7b01a | CARBOHYDRATE SULFOTRANSFERASE |
Ama535_5db7b01a | DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG |
Ama538_5db7b01a | |
Ama539_5db7b01a | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
Ama53_5db7b01a | RAS-RELATED PROTEIN RAB |
Ama540_5db7b01a | LD39211P |
Ama542_5db7b01a | TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE |
Ama543_5db7b01a | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED |
Ama544_5db7b01a | L-THREONINE 3-DEHYDROGENASE |
Ama549_5db7b01a | |
Ama54_5db7b01a | RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C |
Ama552_5db7b01a | PROTEIN CBG26694 |
Ama553_5db7b01a | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
Ama554_5db7b01a | INTRAFLAGELLAR TRANSPORT PROTEIN 25 HOMOLOG |
Ama555_5db7b01a | TETRASPANIN |
Ama556_5db7b01a | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
Ama557_5db7b01a | CEREBELLIN-RELATED |
Ama55_5db7b01a | NF-KAPPA-B INHIBITOR ALPHA |
Ama560_5db7b01a | GLUTATHIONE PEROXIDASE |
Ama561_5db7b01a | EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED |
Ama563_5db7b01a | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA |
Ama564_5db7b01a | SULFOTRANSFERASE SULT |
Ama565_5db7b01a | HSD9 |
Ama566_5db7b01a | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
Ama567_5db7b01a | YBAK DOMAIN-CONTAINING PROTEIN |
Ama569_5db7b01a | G-PROTEIN COUPLED RECEPTOR |
Ama570_5db7b01a | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
Ama572_5db7b01a | ADENINE PHOSPHORIBOSYLTRANSFERASE |
Ama575_5db7b01a | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama576_5db7b01a | PROPERDIN |