The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama39910 | YIPPEE DOMAIN-CONTAINING PROTEIN |
Ama39912 | OPSIN |
Ama39913 | PUTATIVE-RELATED |
Ama39914 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
Ama39916 | |
Ama39917 | |
Ama39918 | |
Ama39919 | SI:CH211-108C17.2-RELATED-RELATED |
Ama39920 | SI:CH211-108C17.2-RELATED-RELATED |
Ama39921 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
Ama39923 | FATTY ACID ACYL TRANSFERASE-RELATED |
Ama39924 | |
Ama39925 | |
Ama39926 | |
Ama39927 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Ama39928 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama39930 | PUTATIVE-RELATED |
Ama39931 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama39932 | |
Ama39933 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama39934 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama39935 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
Ama39936 | SCAVENGER RECEPTOR CLASS F |
Ama39937 | CATION-TRANSPORTING ATPASE-RELATED |
Ama39938 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama39939 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama39940 | |
Ama39941 | |
Ama39942 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
Ama39944 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama39945 | AP ENDONUCLEASE |
Ama39946 | PAXIP1-ASSOCIATED GLUTAMATE-RICH PROTEIN 1 |
Ama39947 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama39948 | INHIBITOR OF APOPTOSIS |
Ama39949 | |
Ama39950 | |
Ama39951 | PLACENTAL PROTEIN 6 |
Ama39952 | NEPHRIN |
Ama39953 | |
Ama39954 | |
Ama39955 | |
Ama39956 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
Ama39957 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama39958 | EPHRIN TYPE-B RECEPTOR |
Ama39961 | |
Ama39962 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
Ama39964 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama39967 | STEROL O-ACYLTRANSFERASE |
Ama39968 | |
Ama39969 | UNC-13-4A, ISOFORM B |