The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama40129 | |
Ama40130 | CYTOSINE DEAMINASE FAMILY MEMBER |
Ama40133 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
Ama40135 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama40136 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama402_5db7b01a | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
Ama403_5db7b01a | LEUCOKININ RECEPTOR-RELATED |
Ama405_5db7b01a | |
Ama405_5db7b01a.1.5db87aae | |
Ama406_5db7b01a | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
Ama408_5db7b01a | KELCH DOMAIN-CONTAINING PROTEIN 3 |
Ama409_5db7b01a | SET DOMAIN-CONTAINING PROTEIN-RELATED |
Ama40_5db7b01a | TUDOR DOMAIN CONTAINING PROTEIN |
Ama40_5db84494.1.5db87aad | SERINE/THREONINE-PROTEIN KINASE |
Ama410_5db7b01a | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama411_5db7b01a | MONOCARBOXYLATE TRANSPORTER |
Ama412_5db7b01a | CYCLIN |
Ama413_5db7b01a | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
Ama414_5db7b01a | DOMON DOMAIN-CONTAINING PROTEIN FRRS1L |
Ama415_5db7b01a | EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER |
Ama417_5db7b01a | ELONGATION FACTOR TS |
Ama418_5db7b01a | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
Ama419_5db7b01a | ZINC FINGER PROTEIN ZIC AND GLI |
Ama41_5db7b01a | |
Ama41_5db84494.2.5db87aad | ADP RIBOSYLATION FACTOR-RELATED |
Ama421_5db7b01a | NUCLEAR HORMONE RECEPTOR |
Ama422_5db7b01a | ATPASE N2B |
Ama423_5db7b01a | |
Ama424_5db7b01a | |
Ama425_5db7b01a | RAS-RELATED PROTEIN RAB |
Ama426_5db7b01a | LIPOYL SYNTHASE |
Ama428_5db7b01a | FI19613P1 |
Ama42_5db84494 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
Ama430_5db7b01a | UNCHARACTERIZED |
Ama431_5db7b01a | DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED |
Ama432_5db7b01a | 4-NITROPHENYLPHOSPHATASE-RELATED |
Ama433_5db7b01a | P53-INDUCED PROTEIN RELATED |
Ama434_5db7b01a | EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C |
Ama435_5db7b01a | |
Ama436_5db7b01a | SPERM-ASSOCIATED ANTIGEN 8 |
Ama43_5db7b01a | |
Ama441_5db7b01a | PROTEIN C8ORF37 |
Ama442_5db7b01a | |
Ama444_5db7b01a | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
Ama446_5db7b01a | |
Ama449_5db7b01a | CYTOCHROME C OXIDASE POLYPEPTIDE |
Ama452_5db7b01a | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED |
Ama453_5db7b01a | SENTRIN/SUMO-SPECIFIC PROTEASE |
Ama454_5db7b01a | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama455_5db7b01a | TRANSMEMBRANE PROTEIN |