The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama40047 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| Ama40048 | |
| Ama40049 | |
| Ama40052 | T-BOX PROTEIN-RELATED |
| Ama40054 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Ama40056 | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN |
| Ama40057 | BONUS, ISOFORM C-RELATED |
| Ama40058 | OS02G0202900 PROTEIN |
| Ama40059 | |
| Ama40060 | |
| Ama40062 | |
| Ama40064 | |
| Ama40065 | |
| Ama40067 | |
| Ama40070 | |
| Ama40071 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Ama40072 | |
| Ama40073 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama40075 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Ama40076 | 12 KDA HEAT SHOCK PROTEIN |
| Ama40079 | |
| Ama40080 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama40081 | PATCHED-RELATED |
| Ama40082 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama40087 | |
| Ama40088 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
| Ama40089 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama40090 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Ama40092 | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama40094 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| Ama40095 | GLYCOLIPID TRANSFER PROTEIN-RELATED |
| Ama40099 | |
| Ama400_5db7b01a | |
| Ama40103 | PLAT DOMAIN-CONTAINING PROTEIN |
| Ama40104 | T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN |
| Ama40107 | |
| Ama40108 | |
| Ama40109 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
| Ama40110 | |
| Ama40111 | ATP-DEPENDENT DNA HELICASE |
| Ama40112 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Ama40113 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Ama40114 | |
| Ama40115 | |
| Ama40116 | |
| Ama40118 | |
| Ama40120 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama40122 | DEOXYRIBONUCLEASE |
| Ama40125 | |
| Ama40127 |
