About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama39970ATP-DEPENDENT RNA HELICASE
Ama39971FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Ama39972CARBOHYDRATE SULFOTRANSFERASE
Ama39973EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama39975E3 UBIQUITIN-PROTEIN LIGASE TRIP12
Ama39976PROTEIN CBG23764
Ama39978B-BOX DOMAIN CONTAINING
Ama39979REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama39981INHIBITOR OF APOPTOSIS
Ama39983CARBONIC ANHYDRASE
Ama39984PROTEIN STAR
Ama399853'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1
Ama39986SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Ama39990
Ama39991DYNEIN HEAVY CHAIN
Ama39992SODIUM/DICARBOXYLATE SYMPORTER-RELATED
Ama39993TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Ama39994SCAVENGER RECEPTOR CLASS F
Ama39995LEUCOKININ RECEPTOR-RELATED
Ama39996SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B
Ama399_5db7b01a
Ama39_5db84494ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Ama3_5db7b01aTRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT
Ama3_5db84494GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1
Ama40001HEDGEHOG
Ama40003IRON-SULFUR PROTEIN NUBPL
Ama40005-
Ama40006CARBOHYDRATE SULFOTRANSFERASE
Ama40008CYTOCHROME P450 FAMILY 4
Ama40012PROTEIN CBG11839-RELATED
Ama40016
Ama40018ARYLSULFATASE FAMILY MEMBER
Ama40019
Ama40022CARBOXYLESTERASE
Ama40023DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama40024
Ama40025ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Ama40027CARBOXYLESTERASE
Ama40028
Ama40029PUTATIVE-RELATED
Ama40030EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama40031
Ama40033
Ama40034STEROL ISOMERASE
Ama40037PARANEOPLASTIC ANTIGEN
Ama40038REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama40040
Ama40041TRANSPOSABLE ELEMENT-RELATED
Ama40042RGM DOMAIN FAMILY MEMBER DRAG-1
Ama40046DIAMINE N-ACETYLTRANSFERASE
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