The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama39556 | |
| Ama39557 | SOLUTE CARRIER FAMILY 5 |
| Ama39558 | |
| Ama39560 | REVERSE TRANSCRIPTASES |
| Ama39561 | THAP DOMAIN PROTEIN |
| Ama39562 | |
| Ama39563 | |
| Ama39564 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
| Ama39565 | DYNEIN LIGHT INTERMEDIATE CHAIN |
| Ama39566 | SEGMENT POLARITY PROTEIN DISHEVELLED |
| Ama39568 | |
| Ama39569 | |
| Ama39570 | THAP DOMAIN PROTEIN |
| Ama39571 | |
| Ama39572 | PROPERDIN |
| Ama39573 | |
| Ama39574 | PROPERDIN |
| Ama39575 | PROPERDIN |
| Ama39577 | |
| Ama39580 | |
| Ama39581 | |
| Ama39582 | |
| Ama39583 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Ama39584 | VERTNIN |
| Ama39585 | RAD9, HUS1, RAD1-INTERACTING NUCLEAR ORPHAN PROTEIN 1 |
| Ama39587 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| Ama39589 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Ama39590 | OUTER SEGMENT 5 |
| Ama39591 | OUTER SEGMENT 5 |
| Ama39596 | - |
| Ama395_5db7b01a | METALLOPHOSPHOESTERASE |
| Ama39600 | CELL DEATH ACTIVATOR CIDE |
| Ama39601 | CELL DEATH ACTIVATOR CIDE |
| Ama39602 | |
| Ama39604 | PA14 DOMAIN-CONTAINING PROTEIN |
| Ama39606 | X-BOX BINDING PROTEIN 1 |
| Ama39607 | |
| Ama39608 | |
| Ama39610 | |
| Ama39615 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Ama39616 | |
| Ama39617 | INHIBITOR OF APOPTOSIS |
| Ama39618 | |
| Ama39619 | HAT DIMERISATION DOMAIN, C-TERMINAL |
| Ama39620 | |
| Ama39621 | |
| Ama39622 | |
| Ama39625 | PROPERDIN |
| Ama39626 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama39627 | SUGAR TRANSPORTER |
