The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama39128 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Ama39130 | ATP-BINDING CASSETTE SUB-FAMILY B |
Ama39131 | ABC TRANSPORTER B FAMILY |
Ama39132 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
Ama39133 | 39S RIBOSOMAL PROTEIN L20 |
Ama39135 | |
Ama39137 | POLYCOMB GROUP PROTEIN |
Ama39138 | DRAB11-RELATED |
Ama39139 | |
Ama39140 | |
Ama39142 | |
Ama39143 | |
Ama39144 | |
Ama39145 | WSCD FAMILY MEMBER CG9164 |
Ama39147 | |
Ama39148 | |
Ama39149 | MUCIN 4-RELATED |
Ama39158 | |
Ama39159 | POU DOMAIN CLASS 2-ASSOCIATING FACTOR 1 |
Ama39171 | |
Ama39173 | HISTIDINE-RICH GLYCOPROTEIN |
Ama39175 | UNCHARACTERIZED |
Ama39176 | |
Ama39177 | E3 UBIQUITIN-PROTEIN LIGASE MARCH5 |
Ama39179 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT |
Ama39180 | DDB1- AND CUL4-ASSOCIATED FACTOR 10 |
Ama39181 | VESICULAR MANNOSE-BINDING LECTIN |
Ama39182 | SMALL NUCLEAR RIBONUCLEOPROTEIN |
Ama39183 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
Ama39184 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
Ama39186 | CS DOMAIN-CONTAINING PROTEIN |
Ama39187 | |
Ama39188 | |
Ama39189 | 39S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL |
Ama39191 | SCAVENGER RECEPTOR CLASS F |
Ama39192 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama39202 | PDZ AND LIM DOMAIN PROTEIN ZASP |
Ama39206 | |
Ama39207 | |
Ama39209 | CELL DIVISION PROTEIN KINASE |
Ama39210 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama39211 | N-ACETYLTRANSFERASE 10 |
Ama39222 | |
Ama39223 | DIMETHYLANILINE MONOOXYGENASE |
Ama39228 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama39229 | THAP DOMAIN PROTEIN |
Ama39230 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama39231 | HEH2P |
Ama39232 | LUNG SEVEN TRANSMEMBRANE RECEPTOR |
Ama39233 |