The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama38510 | |
| Ama38519 | |
| Ama38520 | |
| Ama38521 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
| Ama38522 | |
| Ama38523 | PUTATIVE-RELATED |
| Ama38524 | |
| Ama38525 | RFX TRANSCRIPTION FACTOR FAMILY |
| Ama38526 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama38529 | |
| Ama38530 | PROTEIN SIDEKICK |
| Ama38531 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama38532 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama38536 | LYSINE-SPECIFIC DEMETHYLASE |
| Ama38537 | LYSINE-SPECIFIC DEMETHYLASE |
| Ama38538 | UNCHARACTERIZED |
| Ama38539 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| Ama38542 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| Ama38543 | |
| Ama38544 | |
| Ama38545 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Ama38546 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama38547 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama38549 | |
| Ama38551 | |
| Ama38552 | WNT RELATED |
| Ama38553 | |
| Ama38554 | |
| Ama38556 | |
| Ama38559 | |
| Ama38584 | MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE |
| Ama38585 | |
| Ama38586 | |
| Ama38588 | |
| Ama38589 | |
| Ama38590 | |
| Ama38591 | MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE |
| Ama38592 | ZNF44 PROTEIN |
| Ama38593 | |
| Ama38594 | ZINC FINGER PROTEIN |
| Ama38595 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Ama38596 | |
| Ama38597 | |
| Ama38599 | PLEXIN |
| Ama385_5db7b01a | UNCHARACTERIZED |
| Ama38600 | PLEXIN |
| Ama38601 | PLEXIN |
| Ama38602 | REVERSE TRANSCRIPTASES |
| Ama38605 | |
| Ama38606 | PLEXIN |
