The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama38753 | HISTONE H2B |
Ama38755 | ZINC FINGER, CCHC DOMAIN CONTAINING 8 |
Ama38756 | |
Ama38757 | |
Ama38759 | SOLUTE CARRIER FAMILY 5 |
Ama38760 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
Ama38761 | T-BOX PROTEIN-RELATED |
Ama38762 | ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 1 |
Ama38763 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Ama38764 | PUTATIVE-RELATED |
Ama38769 | |
Ama38770 | WD40 REPEAT PROTEIN |
Ama38771 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
Ama38772 | PROTEIN DISPATCHED-RELATED |
Ama38773 | PROTEIN DISPATCHED-RELATED |
Ama38774 | GLUTAREDOXIN 2 |
Ama38777 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
Ama38778 | |
Ama38779 | APPLE DOMAIN-CONTAINING PROTEIN |
Ama38782 | |
Ama38795 | CYTOCHROME P450 |
Ama38796 | N-ACETYLTRANSFERASE-RELATED |
Ama38797 | |
Ama38798 | PROTEIN CBG10425 |
Ama38799 | |
Ama38800 | |
Ama38801 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama38802 | |
Ama38803 | |
Ama38804 | PROTEIN CBG23764 |
Ama38806 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
Ama38808 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama38809 | |
Ama38847 | - |
Ama38852 | |
Ama38861 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG |
Ama38862 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama38865 | FTP DOMAIN-CONTAINING PROTEIN |
Ama38866 | PROTEIN CBG22215 |
Ama38867 | |
Ama38868 | SCAVENGER RECEPTOR CLASS F |
Ama38869 | PROTEIN CBG22215 |
Ama38870 | |
Ama38871 | SI:CH211-108C17.2-RELATED-RELATED |
Ama38872 | SI:CH211-108C17.2-RELATED-RELATED |
Ama38873 | ZGC:195170 |
Ama38874 | SCAVENGER RECEPTOR CLASS F |
Ama38875 | FTP DOMAIN-CONTAINING PROTEIN |
Ama38876 | PROTEIN CBG22215 |
Ama38878 |