The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama38954 | - |
| Ama38955 | |
| Ama38956 | |
| Ama38961 | UNCHARACTERIZED |
| Ama38965 | MITOGUARDIN |
| Ama38966 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| Ama38967 | FOLLISTATIN-RELATED |
| Ama38970 | |
| Ama38973 | |
| Ama38974 | |
| Ama38975 | CYCLASE-LIKE PROTEIN 2 |
| Ama38976 | CYCLASE-LIKE PROTEIN 2 |
| Ama38979 | |
| Ama38980 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Ama38981 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| Ama38986 | |
| Ama38987 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Ama38988 | ANOCTAMIN |
| Ama38989 | |
| Ama38991 | |
| Ama38993 | |
| Ama38994 | |
| Ama38995 | REGULATOR OF G-PROTEIN SIGNALING 3 |
| Ama38996 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| Ama38998 | DNA HELICASE RECQ FAMILY MEMBER |
| Ama38999 | |
| Ama389_5db7b01a | |
| Ama38_5db7b01a | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
| Ama39000 | |
| Ama39001 | |
| Ama39002 | |
| Ama39004 | |
| Ama39005 | RGD1561648 |
| Ama39006 | |
| Ama39007 | RGD1561648 |
| Ama39011 | G-PROTEIN COUPLED RECEPTOR |
| Ama39017 | |
| Ama39018 | VACUOLAR SORTING PROTEIN 53 |
| Ama39020 | 60S RIBOSOMAL PROTEIN L23A |
| Ama39023 | PROTEIN CBG22215 |
| Ama39024 | FI21293P1 |
| Ama39025 | UNCHARACTERIZED |
| Ama39026 | PROTEIN CBG22215 |
| Ama39027 | MYOSIN LIGHT CHAIN 1, 3 |
| Ama39028 | |
| Ama39029 | |
| Ama39030 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| Ama39031 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| Ama39032 | GH11602P |
| Ama39033 | GH11602P |
