The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama39234 | |
Ama39235 | SERINE-THREONINE PROTEIN KINASE |
Ama39236 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama39237 | |
Ama39238 | |
Ama39239 | |
Ama39240 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama39245 | |
Ama39246 | DELTEX-RELATED |
Ama39248 | THYROTROPH EMBRYONIC FACTOR RELATED |
Ama39249 | ZINC TRANSPORTER 6 |
Ama39252 | |
Ama39253 | UNCHARACTERIZED |
Ama39254 | TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED |
Ama39255 | ATILLA, ISOFORM B-RELATED-RELATED |
Ama39256 | |
Ama39257 | |
Ama39258 | |
Ama39259 | GLUTATHIONE S-TRANSFERASE |
Ama39260 | GLUTATHIONE S-TRANSFERASE |
Ama39261 | PROTEIN CBG10425 |
Ama39262 | PROTEIN CBG10425 |
Ama39263 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama39265 | ATP-BINDING CASSETTE SUB-FAMILY B |
Ama39266 | ZINC FINGER PROTEIN |
Ama39267 | HISTIDINE-RICH CALCIUM-BINDING PROTEIN-RELATED |
Ama39268 | THAP DOMAIN PROTEIN |
Ama39270 | CALPONIN |
Ama39272 | RIKEN CDNA D130052B06 GENE |
Ama39273 | RIKEN CDNA D130052B06 GENE |
Ama39275 | |
Ama39276 | |
Ama39278 | SH3 DOMAIN-CONTAINING |
Ama39279 | AGAP005574-PA |
Ama39280 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama39281 | THAP DOMAIN PROTEIN |
Ama39282 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama39283 | |
Ama39284 | |
Ama39286 | |
Ama39288 | G-PROTEIN COUPLED RECEPTOR |
Ama39289 | FTP DOMAIN-CONTAINING PROTEIN |
Ama39290 | |
Ama39292 | CHITINASE |
Ama39293 | ZINC FINGER PROTEIN 142 |
Ama39294 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED |
Ama39295 | MYND-TYPE DOMAIN-CONTAINING PROTEIN |
Ama39297 | |
Ama39298 | ANKYRIN REPEAT FAMILY PROTEIN |
Ama39299 | - |