The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama38613 | |
| Ama38633 | CALPONIN |
| Ama38666 | |
| Ama38667 | CALPONIN |
| Ama38691 | |
| Ama38692 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama38696 | |
| Ama38697 | - |
| Ama38698 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Ama38699 | PUTATIVE-RELATED |
| Ama38700 | CYTOKINE RECEPTOR |
| Ama38710 | |
| Ama38713 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Ama38715 | |
| Ama38716 | CALCIUM BINDING PROTEINS |
| Ama38717 | CALCIUM BINDING PROTEINS |
| Ama38718 | |
| Ama38719 | VERTNIN |
| Ama38720 | |
| Ama38721 | FMRFAMIDE RECEPTOR-RELATED |
| Ama38722 | REVERSE TRANSCRIPTASES |
| Ama38723 | |
| Ama38724 | |
| Ama38725 | TRANSPOSON |
| Ama38726 | LYMPHOCYTE EXPANSION MOLECULE |
| Ama38727 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Ama38728 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama38729 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Ama38731 | |
| Ama38732 | LEUCINE-RICH REPEAT-CONTAINING |
| Ama38733 | |
| Ama38734 | |
| Ama38735 | |
| Ama38736 | |
| Ama38737 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN |
| Ama38738 | |
| Ama38739 | PUTATIVE-RELATED |
| Ama38740 | TORSIN |
| Ama38741 | |
| Ama38742 | |
| Ama38743 | |
| Ama38744 | |
| Ama38745 | TRANSPOSON |
| Ama38746 | |
| Ama38747 | |
| Ama38748 | |
| Ama38749 | |
| Ama38750 | |
| Ama38751 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama38752 | HISTONE H2B |
