The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama39776 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
Ama39778 | |
Ama39780 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
Ama39781 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
Ama39782 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
Ama39783 | DUAL OXIDASE 2 |
Ama39784 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Ama39785 | REMODELING AND SPACING FACTOR 1 |
Ama39786 | HERMANSKY-PUDLAK SYNDROME 6 PROTEIN |
Ama39787 | |
Ama39788 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama39789 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama39790 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Ama39791 | BONUS, ISOFORM C-RELATED |
Ama39794 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama39795 | |
Ama39796 | |
Ama39797 | - |
Ama39798 | DEOXYRIBONUCLEASE TATDN2-RELATED |
Ama39799 | |
Ama39800 | OS10G0105400 PROTEIN |
Ama39804 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED |
Ama39805 | |
Ama39808 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
Ama39809 | SENTRIN-SPECIFIC PROTEASE 8 |
Ama39810 | 80 KDA MCM3-ASSOCIATED PROTEIN |
Ama39811 | |
Ama39812 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama39815 | PUTATIVE-RELATED |
Ama39819 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
Ama39822 | SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1 |
Ama39823 | SLL0310 PROTEIN |
Ama39824 | HISTONE H2A |
Ama39825 | HISTONE H3 |
Ama39828 | |
Ama39829 | CYTOCHROME C1 HEME LYASE |
Ama39830 | |
Ama39832 | |
Ama39833 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
Ama39834 | NHL REPEAT-CONTAINING PROTEIN-RELATED |
Ama39835 | PEPTIDASE |
Ama39836 | |
Ama39837 | CXYORF1 |
Ama39838 | DYNEIN HEAVY CHAIN |
Ama39839 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama39842 | DELTA-AMINOLEVULINIC ACID DEHYDRATASE |
Ama39843 | TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 |
Ama39844 | ARMADILLO-TYPE FOLD-RELATED |
Ama39845 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
Ama39846 |