The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama39847 | STEROL ISOMERASE |
| Ama39848 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
| Ama39849 | |
| Ama39850 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama39851 | |
| Ama39852 | |
| Ama39853 | OS05G0310600 PROTEIN |
| Ama39854 | JITTERBUG, ISOFORM N |
| Ama39855 | |
| Ama39856 | |
| Ama39857 | |
| Ama39858 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama39862 | |
| Ama39863 | INHIBITOR OF APOPTOSIS |
| Ama39864 | |
| Ama39865 | |
| Ama39869 | |
| Ama39870 | PROTEIN STAR |
| Ama39871 | BONUS, ISOFORM C-RELATED |
| Ama39872 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED |
| Ama39875 | GH11358P |
| Ama39876 | HOMEO BOX HB9 LIKE A-RELATED |
| Ama39877 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama39879 | |
| Ama39880 | |
| Ama39881 | TUBULIN |
| Ama39883 | UNCHARACTERIZED |
| Ama39884 | |
| Ama39885 | |
| Ama39886 | |
| Ama39887 | |
| Ama39888 | |
| Ama39889 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Ama39890 | NEUROLIGIN |
| Ama39891 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama39892 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Ama39893 | |
| Ama39895 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Ama39896 | |
| Ama39899 | |
| Ama398_5db7b01a | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 |
| Ama39900 | |
| Ama39901 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
| Ama39902 | |
| Ama39903 | OSJNBA0013A04.12 PROTEIN |
| Ama39905 | TYROSINASE FAMILY MEMBER |
| Ama39906 | |
| Ama39907 | PROTEIN CBG12054-RELATED |
| Ama39908 | HILLARIN |
| Ama39909 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
