The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama457_5db7b01a | |
| Ama460_5db7b01a | PROTEASOME REGULATOR PA28 |
| Ama461_5db7b01a | |
| Ama462_5db7b01a | RAGULATOR COMPLEX PROTEIN LAMTOR1 |
| Ama463_5db7b01a | LD33804P |
| Ama464_5db7b01a | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN |
| Ama465_5db7b01a | PROMININ PROM PROTEIN |
| Ama466_5db7b01a | G-PROTEIN COUPLED RECEPTOR |
| Ama467_5db7b01a | PROTEIN CBG26694 |
| Ama468_5db7b01a | MIDNOLIN |
| Ama469_5db7b01a | |
| Ama46_5db7b01a | |
| Ama46_5db84494 | COATOMER |
| Ama471_5db7b01a | MITOCHONDRIAL ATP SYNTHASE B CHAIN |
| Ama473_5db7b01a | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Ama474_5db7b01a | UNCHARACTERIZED |
| Ama475_5db7b01a | |
| Ama476_5db7b01a | GEMIN2 |
| Ama477_5db7b01a | TORSIN-1A-INTERACTING PROTEIN |
| Ama479_5db7b01a | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Ama47_5db84494.1.5db87aaf | RAPSYN-RELATED |
| Ama480_5db7b01a | PHOSPHOPANTETHEINE TRANSFERASE |
| Ama481_5db7b01a | |
| Ama482_5db7b01a | |
| Ama483_5db7b01a | |
| Ama484_5db7b01a | BONE MORPHOGENETIC PROTEIN INHIBITOR, NOGGIN |
| Ama485_5db7b01a | MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN |
| Ama486_5db7b01a | RETICULOCALBIN |
| Ama487_5db7b01a | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Ama488_5db7b01a | |
| Ama489_5db7b01a | MICROTUBULE-ASSOCIATED PROTEIN |
| Ama48_5db7b01a | PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN |
| Ama48_5db84494.2.5db87aaf | ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER |
| Ama490_5db7b01a | |
| Ama491_5db7b01a | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
| Ama492_5db7b01a | |
| Ama493_5db7b01a | |
| Ama495_5db7b01a | |
| Ama496_5db7b01a | |
| Ama49_5db7b01a | |
| Ama4_5db7b01a | |
| Ama500_5db7b01a | |
| Ama501_5db7b01a | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
| Ama502_5db7b01a | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATED |
| Ama503_5db7b01a | |
| Ama505_5db7b01a | TYROSINE-PROTEIN KINASE RECEPTOR |
| Ama506_5db7b01a | PDF RECEPTOR-LIKE PROTEIN-RELATED |
| Ama508_5db7b01a | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9B |
| Ama509_5db7b01a | GH08155P |
| Ama510_5db7b01a | TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 2 |
