The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama640_5db7b01a | SERINE/THREONINE-PROTEIN KINASE NEK |
Ama641_5db7b01a | HEMOGLOBINASE FAMILY MEMBER |
Ama642_5db7b01a | UNCHARACTERIZED |
Ama643_5db7b01a | USP DOMAIN-CONTAINING PROTEIN |
Ama644_5db7b01a | CELL DIVISION PROTEIN KINASE |
Ama64_5db7b01a | FIBROBLAST GROWTH FACTOR |
Ama650_5db7b01a | BLR2807 PROTEIN |
Ama651_5db7b01a | METABOTROPIC GLUTAMATE RECEPTOR |
Ama652_5db7b01a | |
Ama654_5db7b01a | G-PROTEIN COUPLED RECEPTOR |
Ama655_5db7b01a | |
Ama657_5db7b01a | MYELIN PROTEOLIPID |
Ama658_5db7b01a | TETRATRICOPEPTIDE REPEAT PROTEIN 4 |
Ama659_5db7b01a | HOMEOBOX PROTEIN MSX |
Ama65_5db7b01a | TRANSPOSABLE ELEMENT-RELATED |
Ama660_5db7b01a | ROLLING PEBBLES, ISOFORM B |
Ama663_5db7b01a | |
Ama665_5db7b01a | RUS1 FAMILY PROTEIN C16ORF58 |
Ama666_5db7b01a | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 |
Ama668_5db7b01a | UBIQUITIN-CONJUGATING ENZYME E2 |
Ama66_5db7b01a | MIP11318P |
Ama670_5db7b01a | ZINC FINGER PROTEIN |
Ama671_5db7b01a | TYPE-1 ANGIOTENSIN II RECEPTOR-ASSOCIATED PROTEIN |
Ama672_5db7b01a | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
Ama673_5db7b01a | UNCHARACTERIZED |
Ama675_5db7b01a | CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR |
Ama678_5db7b01a | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama67_5db7b01a | UNCHARACTERIZED |
Ama680_5db7b01a | |
Ama681_5db7b01a | CARBOHYDRATE SULFOTRANSFERASE |
Ama683_5db7b01a | TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 4 |
Ama684_5db7b01a | G-PROTEIN COUPLED RECEPTOR |
Ama685_5db7b01a | UNCHARACTERIZED |
Ama687_5db7b01a | METHYL-CPG BINDING PROTEIN, DROSOPHILA |
Ama688_5db7b01a | D-AMINO ACID OXIDASE |
Ama689_5db7b01a | THIAMIN PYROPHOSPHOKINASE |
Ama68_5db7b01a | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
Ama690_5db7b01a | |
Ama691_5db7b01a | INHIBITOR OF APOPTOSIS |
Ama692_5db7b01a | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
Ama693_5db7b01a | |
Ama699_5db7b01a | ZINC FINGER PROTEIN |
Ama6_5db84494.1.5db87aac | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
Ama702_5db7b01a | PROTEIN CBG11750-RELATED |
Ama703_5db7b01a | TRANSMEMBRANE PROTEIN 9 FAMILY MEMBER |
Ama705_5db7b01a | |
Ama706_5db7b01a | OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR |
Ama707_5db7b01a | MYOSIN LIGHT CHAIN 1, 3 |
Ama709_5db7b01a | OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR |
Ama70_5db7b01a |