The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama779_5db7b01a | ADP RIBOSYLATION FACTOR-RELATED |
| Ama77_5db7b01a | AD039 HT014 THIOREDOXIN FAMILY TRP26 |
| Ama780_5db7b01a | ADENOMATOSIS POLYPOSIS COLI DOWN-REGULATED 1 |
| Ama781_5db7b01a | |
| Ama782_5db7b01a | SCAVENGER RECEPTOR CLASS F |
| Ama783_5db7b01a | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| Ama788_5db7b01a | |
| Ama78_5db7b01a | BONUS, ISOFORM C-RELATED |
| Ama790_5db7b01a | UBIQUITIN-ACTIVATING ENZYME E1 |
| Ama791_5db7b01a | |
| Ama792_5db7b01a | SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT |
| Ama793_5db7b01a | |
| Ama794_5db7b01a | COENZYME Q10 BIOSYNTHESIS PROTEIN 7 |
| Ama796_5db7b01a | KINETOCHORE-ASSOCIATED PROTEIN 1 |
| Ama797_5db7b01a | PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN |
| Ama798_5db7b01a | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| Ama799_5db7b01a | SI:CH211-59O9.10 |
| Ama79_5db7b01a | 42-9-9 PROTEIN-RELATED |
| Ama7_5db7b01a | RAB FAMILY |
| Ama800_5db7b01a | |
| Ama801_5db7b01a | MELANOCYTE PROTEIN PMEL 17-RELATED |
| Ama802_5db7b01a | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| Ama803_5db7b01a | ERO1-RELATED |
| Ama804_5db7b01a | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| Ama805_5db7b01a | SULFATE TRANSPORTER |
| Ama806_5db7b01a | UNCHARACTERIZED |
| Ama807_5db7b01a | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
| Ama808_5db7b01a | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| Ama809_5db7b01a | DNA-DAMAGE-INDUCIBLE TRANSCRIPT 4 PROTEIN DDIT4 |
| Ama811_5db7b01a | |
| Ama812_5db7b01a | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
| Ama813_5db7b01a | NEURON-DERIVED NEUROTROPHIC FACTOR |
| Ama81_5db7b01a | G-PROTEIN COUPLED RECEPTOR 143 |
| Ama83_5db7b01a | RAG1-ACTIVATING PROTEIN 1 |
| Ama85_5db7b01a | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
| Ama87_5db7b01a | PHOSPHOLIPASE-RELATED |
| Ama88_5db7b01a | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
| Ama89_5db7b01a | EXPRESSED PROTEIN |
| Ama90_5db7b01a | |
| Ama92_5db7b01a | G-PROTEIN COUPLED RECEPTOR |
| Ama93_5db7b01a | ANKYRIN REPEAT PROTEIN |
| Ama94_5db7b01a | METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE |
| Ama95_5db7b01a.1.5db7de6c | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Ama96_5db7b01a | UPF0538 FAMILY MEMBER |
| Ama97_5db7b01a | RNA-BINDING PROTEIN NOB1 |
| Ama99_5db7b01a | THIOESTERASE |
| Ama9_5db7b01a | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| split_gene | |
| temp_model_2.1.5db7de70 |
