The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama37350 | |
| Ama37352 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Ama37353 | RETROTRANSPOSON |
| Ama37354 | RETROTRANSPOSON |
| Ama37355 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Ama37358 | RETROTRANSPOSON |
| Ama37359 | PUTATIVE-RELATED |
| Ama37361 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama37362 | HEPATOMA-DERIVED GROWTH FACTOR-RELATED |
| Ama37363 | TETRATRICOPEPTIDE REPEAT PROTEIN 23 |
| Ama37364 | TALIN ROD DOMAIN-CONTAINING PROTEIN 1 |
| Ama37367 | - |
| Ama37372 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Ama37373 | GLYCOPROTEIN HORMONE RECEPTOR |
| Ama37374 | |
| Ama37375 | INHIBITOR OF APOPTOSIS |
| Ama37377 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama37378 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Ama37380 | GLYCOPROTEIN HORMONE RECEPTOR |
| Ama37381 | - |
| Ama37385 | |
| Ama37386 | |
| Ama37388 | |
| Ama37393 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Ama37394 | TRANSPOSABLE ELEMENT-RELATED |
| Ama37398 | |
| Ama37399 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Ama373_5db7b01a | SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP |
| Ama37400 | IP13529P |
| Ama37401 | |
| Ama37402 | |
| Ama37403 | |
| Ama37406 | |
| Ama37407 | SIMILAR TO RIKEN CDNA E130308A19 |
| Ama37411 | |
| Ama37414 | |
| Ama37415 | GLYCOPROTEIN HORMONE RECEPTOR |
| Ama37416 | GLYCOPROTEIN HORMONE RECEPTOR |
| Ama37420 | |
| Ama37421 | |
| Ama37422 | PLASMINOGEN-RELATED |
| Ama37423 | GLYCOPROTEIN HORMONE RECEPTOR |
| Ama37425 | |
| Ama37427 | |
| Ama37428 | |
| Ama37429 | |
| Ama37430 | |
| Ama37435 | |
| Ama37436 | |
| Ama37439 |
