The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama37509 | |
| Ama37510 | BNIP - RELATED |
| Ama37514 | |
| Ama37515 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
| Ama37516 | UNCHARACTERIZED |
| Ama37517 | |
| Ama37520 | |
| Ama37524 | |
| Ama37525 | LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN |
| Ama37526 | - |
| Ama37527 | TIGHT JUNCTION PROTEIN |
| Ama37528 | |
| Ama37529 | TIGHT JUNCTION PROTEIN |
| Ama37530 | TIGHT JUNCTION PROTEIN |
| Ama37531 | TIGHT JUNCTION PROTEIN |
| Ama37532 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Ama37533 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
| Ama37534 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Ama37535 | |
| Ama37536 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Ama37537 | |
| Ama37538 | |
| Ama37539 | |
| Ama37541 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Ama37542 | ORGANIC ANION TRANSPORTER |
| Ama37543 | ORGANIC ANION TRANSPORTER |
| Ama37544 | ORGANIC ANION TRANSPORTER |
| Ama37546 | |
| Ama37547 | |
| Ama37548 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama37549 | |
| Ama37550 | ORGANIC ANION TRANSPORTER |
| Ama37551 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Ama37552 | ORGANIC ANION TRANSPORTER |
| Ama37554 | |
| Ama37556 | |
| Ama37557 | |
| Ama37558 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Ama37559 | |
| Ama37560 | |
| Ama37561 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama37562 | |
| Ama37563 | |
| Ama37564 | GLYCOPROTEIN HORMONE RECEPTOR |
| Ama37565 | |
| Ama37566 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| Ama37569 | |
| Ama37571 | PLASMINOGEN-RELATED |
| Ama37572 | |
| Ama37578 |
