The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama370_5db7b01a | E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER |
Ama37101 | |
Ama37103 | |
Ama37104 | |
Ama37107 | |
Ama37109 | |
Ama37111 | SIMILAR TO PREFERENTIALLY EXPRESSED ANTIGEN IN MELANOMA-LIKE 3 |
Ama37113 | AGAP011099-PA |
Ama37114 | TRANSLATION FACTOR |
Ama37115 | 30S RIBOSOMAL PROTEIN S14 |
Ama37117 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama37119 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
Ama37120 | |
Ama37121 | FI04643P-RELATED |
Ama37122 | MACROPHAGE-EXPRESSED GENE 1 PROTEIN |
Ama37123 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
Ama37124 | FTP DOMAIN-CONTAINING PROTEIN |
Ama37125 | PROTEIN CBG22215 |
Ama37126 | HYR DOMAIN-CONTAINING PROTEIN |
Ama37127 | HYR DOMAIN-CONTAINING PROTEIN |
Ama37128 | FI04643P-RELATED |
Ama37129 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
Ama37130 | KU AUTOANTIGEN DNA HELICASE |
Ama37131 | ZINC FINGER PROTEIN |
Ama37132 | ALCOHOL DEHYDROGENASE |
Ama37133 | THAP DOMAIN PROTEIN |
Ama37134 | |
Ama37135 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Ama37136 | TRANSPOSON |
Ama37141 | |
Ama37152 | GLYCOPROTEIN HORMONE RECEPTOR |
Ama37153 | VOLTAGE-GATED POTASSIUM CHANNEL |
Ama37157 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
Ama37162 | |
Ama37166 | |
Ama37167 | WD REPEAT-CONTAINING PROTEIN 61 |
Ama37169 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
Ama37171 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE |
Ama37175 | |
Ama37177 | UNCHARACTERIZED |
Ama37178 | PROTEIN CBG11839-RELATED |
Ama37181 | |
Ama37182 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
Ama37183 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
Ama37184 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Ama37185 | LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED |
Ama37186 | |
Ama37187 | N-LYSINE METHYLTRANSFERASE KMT5A |
Ama37188 | |
Ama37190 | ATP-DEPENDENT DNA HELICASE |