The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama37191 | LORICRIN |
Ama37192 | |
Ama37193 | THAP DOMAIN PROTEIN |
Ama37194 | ATP-DEPENDENT DNA HELICASE |
Ama37195 | PROTEIN CBG22215 |
Ama37197 | |
Ama37198 | SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 |
Ama37199 | |
Ama371_5db7b01a | UNCHARACTERIZED |
Ama37201 | |
Ama37202 | SCAVENGER RECEPTOR CLASS F |
Ama37203 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
Ama37204 | SCAVENGER RECEPTOR CLASS F |
Ama37206 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
Ama37207 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
Ama37210 | NON-HOMOLOGOUS END-JOINING FACTOR 1 |
Ama37212 | - |
Ama37213 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama37214 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama37216 | |
Ama37219 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
Ama37221 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama37222 | |
Ama37224 | GH03947P |
Ama37226 | |
Ama37229 | |
Ama37231 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
Ama37232 | |
Ama37234 | MYOSIN |
Ama37235 | |
Ama37238 | MYOSIN |
Ama37239 | |
Ama37251 | |
Ama37253 | |
Ama37259 | TRANSPOSON |
Ama37260 | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 |
Ama37261 | AN1-TYPE ZINC FINGER PROTEIN |
Ama37269 | HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER |
Ama37270 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
Ama37271 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama37272 | |
Ama37275 | LORICRIN |
Ama37277 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
Ama37278 | PLASMINOGEN-RELATED |
Ama37280 | |
Ama37281 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama37284 | ADENOMATOUS POLYPOSIS COLI PROTEIN FAMILY |
Ama37286 | ZINC FINGER PROTEIN |
Ama37287 | LD39211P |
Ama37288 | GLYCOPROTEIN HORMONE RECEPTOR |