The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama36201 | |
| Ama36202 | |
| Ama36203 | |
| Ama36205 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
| Ama36206 | |
| Ama36208 | |
| Ama36209 | EGALITARIAN, ISOFORM B |
| Ama36211 | |
| Ama36212 | PROTEIN CBG23764 |
| Ama36213 | |
| Ama36214 | |
| Ama36215 | |
| Ama36216 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama36217 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| Ama36219 | ATP-DEPENDENT DNA HELICASE |
| Ama36220 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Ama36221 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Ama36222 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama36223 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA |
| Ama36224 | COILED-COIL DOMAIN-CONTAINING PROTEIN 157 |
| Ama36225 | POTASSIUM CHANNEL, SUBFAMILY K |
| Ama36227 | THAP DOMAIN PROTEIN |
| Ama36228 | |
| Ama36229 | MATERNAL EFFECT PROTEIN STAUFEN |
| Ama36230 | THAP DOMAIN PROTEIN |
| Ama36231 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Ama36232 | |
| Ama36235 | HELICASE |
| Ama36238 | |
| Ama36239 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama36240 | |
| Ama36241 | |
| Ama36242 | ZINC FINGER PROTEIN |
| Ama36245 | |
| Ama36246 | |
| Ama36247 | EG:80H7.2 PROTEIN |
| Ama36248 | |
| Ama36250 | RETINOVIN-RELATED |
| Ama36254 | |
| Ama36256 | TUBULIN |
| Ama36258 | TUBULIN |
| Ama36264 | WHEY ACDIC PROTEIN WAP |
| Ama36265 | WHEY ACDIC PROTEIN WAP |
| Ama36267 | |
| Ama36268 | |
| Ama36269 | |
| Ama36282 | |
| Ama36289 | METABOTROPIC GLUTAMATE RECEPTOR |
| Ama36290 | METABOTROPIC GLUTAMATE RECEPTOR |
| Ama36291 | METABOTROPIC GLUTAMATE RECEPTOR |
