The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama36066 | RAB FAMILY |
Ama36067 | PROTEIN DISULFIDE-ISOMERASE A6 |
Ama36068 | TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN |
Ama36070 | PROTEIN KINASE C-BINDING PROTEIN 1 |
Ama36073 | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN |
Ama36074 | UNCHARACTERIZED |
Ama36075 | GLYCOSYLTRANSFERASE |
Ama36076 | ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 |
Ama36077 | CONTACTIN 5 |
Ama36078 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama36079 | ZINC FINGER PROTEIN |
Ama36080 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
Ama36081 | |
Ama36082 | METHYL-CPG-BINDING PROTEIN |
Ama36083 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama36084 | REVERSE TRANSCRIPTASES |
Ama36085 | PROTEIN NEDD1 |
Ama36086 | COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6 |
Ama36087 | |
Ama36088 | |
Ama36089 | SERINE/THREONINE-PROTEIN KINASE PIM |
Ama36090 | RAS-RELATED GTP BINDING RAG/GTR YEAST |
Ama36091 | ACETYLGLUCOSAMINYLTRANSFERASE |
Ama36092 | |
Ama36093 | DUAL SPECIFICITY PROTEIN KINASE |
Ama36094 | DUAL SPECIFICITY PROTEIN KINASE |
Ama36098 | EXOCYST COMPLEX COMPONENT SEC6-RELATED |
Ama36099 | GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN |
Ama360_5db7b01a | POLY [ADP-RIBOSE] POLYMERASE |
Ama36105 | G-PROTEIN COUPLED RECEPTOR |
Ama36107 | 60S ACIDIC RIBOSOMAL PROTEIN P1 |
Ama36108 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
Ama36109 | RIBOSOMAL PROTEIN L30 |
Ama36110 | THAP DOMAIN PROTEIN |
Ama36111 | AGAP005574-PA |
Ama36112 | |
Ama36113 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Ama36115 | PUTATIVE-RELATED |
Ama36116 | UPSTREAM BINDING TRANSCRIPTION FACTOR |
Ama36118 | |
Ama36119 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
Ama36120 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
Ama36121 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
Ama36122 | |
Ama36124 | |
Ama36125 | ZINC FINGER PROTEIN |
Ama36127 | DISCS LARGE |
Ama36128 | DISCS LARGE |
Ama36129 | |
Ama36131 |